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configure aux iid and aux gid #260

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merged 3 commits into from
Jun 20, 2024

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MatthewErispe
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@MatthewErispe MatthewErispe commented Jun 13, 2024

Summary by CodeRabbit

  • New Features

    • Introduced new fields aux_iid and aux_gid in configuration with support for source generation functions.
  • Improvements

    • Enhanced data handling in auxiliary interaction and demographic data processing.
    • Updated query logic to include aux_gid for more comprehensive data selection.
  • Maintenance

    • Upgraded Docker deployment to use Java version 21.0.3.
    • Refined utility functions to centralize and simplify function applications.

@rcrichton
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coderabbitai bot commented Jun 13, 2024

Walkthrough

The recent updates involve enhancements to both data processing and deployment aspects of the JeMPI Applications. Core changes include modifying the methods auxInteractionData and demographicData in Main.java to handle csvCol values differently, incorporating AppUtils.applyFunction. Additionally, there are query updates, new configuration fields, and a Java version bump in the deployment script to ensure compatibility and streamlined processing.

Changes

File Path Change Summary
JeMPI_Apps/JeMPI_AsyncReceiver/src/.../Main.java Modified auxInteractionData and demographicData to handle csvCol values using AppUtils.applyFunction.
JeMPI_Apps/JeMPI_LibShared/src/.../AuxGoldenRecordData.java Included an import for AppUtils and utilized AppUtils.applyFunction.
JeMPI_Apps/JeMPI_LibShared/src/.../AppUtils.java Replaced autoGenerateId with applyFunction to manage varied functions using a switch statement.
devops/linux/docker/data-config/config-reference-link-dp.json Introduced new fields aux_iid and aux_gid with String type and source generation via AppUtils::autoGenerateId.
devops/linux/docker/deployment/deploy-local.sh Updated Java version from 21.0.1-tem to 21.0.3-tem, removed run_field_configuration_file calls.
JeMPI_Apps/JeMPI_LibShared/src/.../Programs.java Added GoldenRecord.aux_gid to blockSelectQuery and deterministicSelectQuery methods.

Poem

In the realm of data's gleam,
Changes flow like a silken stream.
With functions new and versions high,
Java's wings take flight to fly.
Data mapped and queries tweaked,
The golden record now speaks!
🐰✨🚀


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Actionable comments posted: 0

Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between 2ac13ef and 65c141f.

Files selected for processing (4)
  • JeMPI_Apps/JeMPI_AsyncReceiver/src/main/java/org/jembi/jempi/async_receiver/Main.java (3 hunks)
  • JeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/models/AuxGoldenRecordData.java (2 hunks)
  • JeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/utils/AppUtils.java (1 hunks)
  • devops/linux/docker/data-config/config-reference-link-dp.json (2 hunks)
Additional comments not posted (4)
JeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/utils/AppUtils.java (1)

66-70: The implementation of applyFunction is concise and correctly handles AppUtils::autoGenerateId. Consider extending this for more functionalities in the future.

JeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/models/AuxGoldenRecordData.java (1)

Line range hint 8-41: The integration of AppUtils.applyFunction in the constructor enhances the flexibility in handling auxiliary data fields. This change aligns well with the PR's objectives to configure auxiliary IDs dynamically.

devops/linux/docker/data-config/config-reference-link-dp.json (1)

22-28: The new configuration entries for aux_iid and aux_gid are correctly set to utilize AppUtils::autoGenerateId. This ensures consistent and dynamic ID generation, aligning with the PR's goals.

Also applies to: 49-55

JeMPI_Apps/JeMPI_AsyncReceiver/src/main/java/org/jembi/jempi/async_receiver/Main.java (1)

78-83: The updates in auxInteractionData and demographicData methods to utilize AppUtils.applyFunction enhance the flexibility and robustness of data handling. This aligns well with the PR's objectives and improves the system's ability to handle diverse data sources dynamically.

Also applies to: 102-102

Updated the Java version to 21.0.3 in a deployment script,
Also, removed the filed configuration script from the deployment script.
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Actionable comments posted: 1

Outside diff range and nitpick comments (3)
devops/linux/docker/deployment/deploy-local.sh (3)

Line range hint 1-1: Add a shebang to specify the script's interpreter explicitly.

+ #!/bin/bash
Tools
Shellcheck

[warning] 4-4: Declare and assign separately to avoid masking return values. (SC2155)


Line range hint 76-243: Ensure directory changes do not fail silently by handling potential failures of pushd and popd.

- pushd "$JEMPI_HOME/devops/linux/docker/deployment/"
+ pushd "$JEMPI_HOME/devops/linux/docker/deployment/" || exit
- popd
+ popd || exit

Repeat this pattern for all occurrences of pushd and popd in the script.


Line range hint 159-159: Handle potential failure of cd to ensure the script does not continue on an incorrect path.

- cd ../../../../
+ cd ../../../../ || exit
Tools
Shellcheck

[warning] 4-4: Declare and assign separately to avoid masking return values. (SC2155)

Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between 65c141f and edbe555.

Files selected for processing (1)
  • devops/linux/docker/deployment/deploy-local.sh (4 hunks)
Additional context used
Shellcheck
devops/linux/docker/deployment/deploy-local.sh

[error] 1-1: Tips depend on target shell and yours is unknown. Add a shebang or a 'shell' directive. (SC2148)


[warning] 4-4: Declare and assign separately to avoid masking return values. (SC2155)


[warning] 76-76: Use 'pushd ... || exit' or 'pushd ... || return' in case pushd fails. (SC2164)


[warning] 79-79: Use 'popd ... || exit' or 'popd ... || return' in case popd fails. (SC2164)


[warning] 85-85: Use 'pushd ... || exit' or 'pushd ... || return' in case pushd fails. (SC2164)


[warning] 87-87: Use 'popd ... || exit' or 'popd ... || return' in case popd fails. (SC2164)


[warning] 91-91: Use 'pushd ... || exit' or 'pushd ... || return' in case pushd fails. (SC2164)


[warning] 93-93: Use 'popd ... || exit' or 'popd ... || return' in case popd fails. (SC2164)


[warning] 99-99: Use 'pushd ... || exit' or 'pushd ... || return' in case pushd fails. (SC2164)


[warning] 101-101: Use 'popd ... || exit' or 'popd ... || return' in case popd fails. (SC2164)


[warning] 110-110: Use 'pushd ... || exit' or 'pushd ... || return' in case pushd fails. (SC2164)


[warning] 112-112: Use 'popd ... || exit' or 'popd ... || return' in case popd fails. (SC2164)


[warning] 118-118: Use 'pushd ... || exit' or 'pushd ... || return' in case pushd fails. (SC2164)


[warning] 129-129: Use 'popd ... || exit' or 'popd ... || return' in case popd fails. (SC2164)


[warning] 136-136: Use 'pushd ... || exit' or 'pushd ... || return' in case pushd fails. (SC2164)


[warning] 138-138: Use 'popd ... || exit' or 'popd ... || return' in case popd fails. (SC2164)


[warning] 142-142: Use 'pushd ... || exit' or 'pushd ... || return' in case pushd fails. (SC2164)


[warning] 144-144: Use 'popd ... || exit' or 'popd ... || return' in case popd fails. (SC2164)


[warning] 152-152: Use 'pushd ... || exit' or 'pushd ... || return' in case pushd fails. (SC2164)


[warning] 156-156: Use 'popd ... || exit' or 'popd ... || return' in case popd fails. (SC2164)


[warning] 159-159: Use 'cd ... || exit' or 'cd ... || return' in case cd fails. (SC2164)


[warning] 168-168: Use 'pushd ... || exit' or 'pushd ... || return' in case pushd fails. (SC2164)


[warning] 172-172: Use 'popd ... || exit' or 'popd ... || return' in case popd fails. (SC2164)


[warning] 209-209: Use 'pushd ... || exit' or 'pushd ... || return' in case pushd fails. (SC2164)


[warning] 211-211: Use 'popd ... || exit' or 'popd ... || return' in case popd fails. (SC2164)


[warning] 215-215: Use 'pushd ... || exit' or 'pushd ... || return' in case pushd fails. (SC2164)


[warning] 217-217: Use 'popd ... || exit' or 'popd ... || return' in case popd fails. (SC2164)


[warning] 222-222: Use 'pushd ... || exit' or 'pushd ... || return' in case pushd fails. (SC2164)


[warning] 225-225: Use 'popd ... || exit' or 'popd ... || return' in case popd fails. (SC2164)


[warning] 240-240: Use 'pushd ... || exit' or 'pushd ... || return' in case pushd fails. (SC2164)


[warning] 243-243: Use 'popd ... || exit' or 'popd ... || return' in case popd fails. (SC2164)

Additional comments not posted (2)
devops/linux/docker/deployment/deploy-local.sh (2)

6-6: Update to Java version 21.0.3-tem is noted. Ensure compatibility with all dependencies.


252-252: The switch-case structure is well-implemented for handling user choices. Ensure all cases are covered and default to an error message for unexpected input.

@@ -3,7 +3,7 @@
cd ../../../../
export JEMPI_HOME="$(pwd)"
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Declare and assign JEMPI_HOME separately to avoid masking return values.

- export JEMPI_HOME="$(pwd)"
+ JEMPI_HOME="$(pwd)"
+ export JEMPI_HOME
Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
export JEMPI_HOME="$(pwd)"
JEMPI_HOME="$(pwd)"
export JEMPI_HOME
Tools
Shellcheck

[warning] 4-4: Declare and assign separately to avoid masking return values. (SC2155)

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Actionable comments posted: 1

Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between edbe555 and f70d1f3.

Files selected for processing (2)
  • JeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/config/linker/Programs.java (4 hunks)
  • JeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/models/AuxGoldenRecordData.java (2 hunks)
Files skipped from review as they are similar to previous changes (1)
  • JeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/models/AuxGoldenRecordData.java
Additional comments not posted (2)
JeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/config/linker/Programs.java (2)

201-201: Added retrieval of GoldenRecord.aux_gid in blockSelectQuery. Ensure that downstream systems or processes that consume this query can handle this new field appropriately.


303-303: The inclusion of GoldenRecord.aux_gid in queries within deterministicSelectQuery is consistent with similar changes in other parts of the code. This should be reflected in all relevant documentation and integration points.

Also applies to: 340-340

@@ -266,6 +267,7 @@ private static String blockSelectQuery(
GoldenRecord.aux_date_created
GoldenRecord.aux_auto_update_enabled
GoldenRecord.aux_id
GoldenRecord.aux_gid
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Tip

Codebase Verification

The searches for test cases and documentation involving GoldenRecord.aux_gid did not reveal any relevant results outside of JeMPI_Apps/JeMPI_LibShared/src/main/java/org/jembi/jempi/shared/config/linker/Programs.java. This indicates that there are no test cases or documentation covering this new addition.

  • Ensure that test cases are written to cover the new GoldenRecord.aux_gid field.
  • Update the documentation to include information about GoldenRecord.aux_gid.
Analysis chain

Ensured consistent handling of GoldenRecord.aux_gid in deterministicSelectQuery. Verify that all intended use cases for this additional field are documented and tested.


[task review_file_1/1 section_2/3 sub-task_2/3] Verify if there are any test cases related to GoldenRecord.aux_gid.
[actions] Use rg to search for GoldenRecord.aux_gid in test directories.

#!/bin/bash
# Search for test cases involving GoldenRecord.aux_gid in common test directories
rg --type java "GoldenRecord.aux_gid" test/ tests/ src/test/

[task review_file_1/1 section_2/3 sub-task_3/3] Ensure that the documentation covers the use of GoldenRecord.aux_gid.
[actions] Use rg to search for GoldenRecord.aux_gid in documentation files.

#!/bin/bash
# Search for documentation involving GoldenRecord.aux_gid
rg "GoldenRecord.aux_gid" docs/ README.md

The previous attempts to verify the presence of test cases and documentation for GoldenRecord.aux_gid were unsuccessful due to missing directories. To ensure thorough verification, let's search for test cases and documentation in the entire repository without assuming specific directory names.

Scripts executed

The following scripts were executed for the analysis:


Script:

#!/bin/bash
# Description: Ensure that all use cases for `GoldenRecord.aux_gid` are documented and tested.

# Test: Search for test cases involving `GoldenRecord.aux_gid`.
rg --type java "GoldenRecord.aux_gid" tests/

Length of output: 91



Script:

#!/bin/bash
# Search for occurrences of GoldenRecord.aux_gid in the entire codebase
rg --type java "GoldenRecord.aux_gid"

Length of output: 585



Script:

#!/bin/bash
# Search for test cases involving GoldenRecord.aux_gid in common test directories
rg --type java "GoldenRecord.aux_gid" test/ tests/ src/test/

Length of output: 203


Script:

#!/bin/bash
# Search for documentation involving GoldenRecord.aux_gid
rg "GoldenRecord.aux_gid" docs/ README.md

Length of output: 87



Script:

#!/bin/bash
# Search for test cases involving GoldenRecord.aux_gid in the entire repository
rg --type java "GoldenRecord.aux_gid"

Length of output: 585


Script:

#!/bin/bash
# Search for documentation involving GoldenRecord.aux_gid in the entire repository
rg "GoldenRecord.aux_gid"

Length of output: 573

@sushantpatil1214
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looks good to me

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Looks good to me.

@MatthewErispe MatthewErispe merged commit ef76459 into dev Jun 20, 2024
5 checks passed
@MatthewErispe MatthewErispe deleted the CU-86bz2q4r4_Create-Aux-Golden-and-Interaction-Id branch June 20, 2024 11:31
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3 participants