Pinned Loading
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HG-GBSA-Optimization
HG-GBSA-Optimization PublicExample for running GBSA optimization targeting host-guest binding data with OpenFF-Evaluator and ForceBalance
Jupyter Notebook 2
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pAPRika
pAPRika PublicForked from GilsonLabUCSD/pAPRika
Advanced toolkit for binding free energy calculations
Python
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pseudo-hard-sphere-solvation-scripts
pseudo-hard-sphere-solvation-scripts PublicRepository containing setup and analysis scripts used in the paper investigating "high-energy" water in cucurbit[n]uril.
Python
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hfe-openmm-jupyter
hfe-openmm-jupyter PublicThis repository contains jupyter notebooks to calculate hydration free energies in OpenMM
Jupyter Notebook 1
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ion_solvation_openmm
ion_solvation_openmm PublicIon solvation free energy with spherical boundary conditions
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position_diffusion
position_diffusion PublicPosition dependent diffusivity of a molecule that is under an external harmonic potential
Python
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