New Features
- Allow ion diffusion with
cell.diffuse()and add tutorials (#438, @michaeldeistler):
from jaxley.channels import CaNernstReversal
from jaxley.pumps import CaFaradayConcentrationChange
cell.insert(CaFaradayConcentrationChange())
cell.insert(CaNernstReversal())
cell.diffuse("CaCon_i")
cell.set("axial_diffusion_CaCon_i", 1.0)- Introduce ion pumps (#438, @michaeldeistler)
Bug fixes
- Fix for simulation of morphologies with inhomogenous numbers of compartments (#438, @michaeldeistler)
- Bugfix for types assigned by SWC reader when soma is traced by a single point (#582, @Kartik-Sama, @michaeldeistler).
Code health
- add new release workflow (#588, @jnsbck)
- update FAQ and tutorials (#593, @michaeldeistler)
Contributors
michaeldeistler, Kartik-Sama, and jnsbck