Generate lightness corrected color-coded fractional anisotropy maps (LCFAMs).
For the command line utility you will need Python 2.7 and scikit-image, which can be installed with
pip install scikit-image
the IPython notebook has additional requirements for the visualisation of the results. These can be installed with
pip install ipython[all]
pip install scikit-image
pip install seaborn
Run the Jupyter notebook on your local computer or see it online at http://nbviewer.ipython.org/github/janten/lcfam/tree/master/lcfam.ipynb.
To create an LCFAM from the comman line, use lcfam.py:
$ python lcfam.py <cfam.png> <fam.png> <outfile.png>