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Project template for PHI annotation #5064

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reckart opened this issue Sep 25, 2024 · 0 comments
Closed

Project template for PHI annotation #5064

reckart opened this issue Sep 25, 2024 · 0 comments
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@reckart
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⭐️ Enhancement New feature or request
Milestone
34.0

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@reckart
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reckart commented Sep 25, 2024

Is your feature request related to a problem? Please describe.
Annotation Personal Health Information is a typical annotation task in the healthcare domain. INCEpTION has recently been used for this task, e.g. in preparation of GraSCCo PHI.

Describe the solution you'd like
Provide a project template for PHI to help people get started with such a task. Use the GraSCCo PHI scheme as a basis and include some sample data from it as well.
@reckart reckart added the ⭐️ Enhancement New feature or request label Sep 25, 2024
@reckart reckart added this to the 34.0 milestone Sep 25, 2024
@reckart reckart self-assigned this Sep 25, 2024
@reckart reckart added this to Kanban Sep 25, 2024
@github-project-automation github-project-automation bot moved this to 🔖 To do in Kanban Sep 25, 2024
reckart added a commit that referenced this issue Sep 25, 2024
@reckart
#5064 - Project template for PHI annotation
dc23757 
- Added the project template
reckart added a commit that referenced this issue Sep 25, 2024
@reckart
#5064 - Project template for PHI annotation
db06363 
- Added the project template
reckart added a commit that referenced this issue Sep 25, 2024
@reckart
#5064 - Project template for PHI annotation
42f7c6b 
- Added the project template
reckart added a commit that referenced this issue Sep 29, 2024
@reckart
#5064 - Project template for PHI annotation
ab9f7d0 
- Added images
reckart added a commit that referenced this issue Sep 29, 2024
@reckart
Merge pull request #5065 from inception-project/feature/5064-Project-…
4e6beec 
…template-for-PHI-annotation

#5064 - Project template for PHI annotation
@reckart reckart closed this as completed Sep 29, 2024
@github-project-automation github-project-automation bot moved this from 🔖 To do to 🍹 Done in Kanban Sep 29, 2024
reckart added a commit that referenced this issue Sep 30, 2024
@reckart
Merge branch 'release/34.x'
e9c265b 
* release/34.x:
  #5043 - Ability to specify token breaking zones when calling tokenizer
  #5064 - Project template for PHI annotation
  #5071 - Better document which layers are supported by which formats
  #5064 - Project template for PHI annotation
reckart added a commit that referenced this issue Oct 1, 2024
@reckart
Merge branch 'main' into feature/4931-Support-for-GraphDB-knowledge-b…
a26a723 
…ases

* main: (110 commits)
  [maven-release-plugin] prepare for next development iteration
  [maven-release-plugin] prepare release inception-34.0
  No issue: Mention MS SQL and PosgreSQL as experimental DB options
  No issue: Fix versions after merge
  #5043 - Ability to specify token breaking zones when calling tokenizer
  #5064 - Project template for PHI annotation
  #5071 - Better document which layers are supported by which formats
  #5061 - Multiple synchronous recommenders only the last one wins
  #5064 - Project template for PHI annotation
  #5068 - Show annotation sidebar by default
  #5033 - Ability to configure recommenders interactively on the annotation page
  #5066 - Increase default number of rows for brat editors
  #5056 - Ability to configure additional languages for knowledge bases
  #4909 - Upgrade dependencies
  #5056 - Ability to configure additional languages for knowledge bases
  #4909 - Upgrade dependencies
  No issue: Actually, document-metadata doesn't seem to be experimental after all...
  No issue: Set version to 35.0-SNAPSHOT
  [maven-release-plugin] prepare for next development iteration
  [maven-release-plugin] prepare release inception-33.7
  ...
reckart added a commit that referenced this issue Oct 1, 2024
@reckart
Merge branch 'main' into feature/4699-Ability-to-export-all-layers-as…
630426e 
…-JSON

* main: (308 commits)
  [maven-release-plugin] prepare for next development iteration
  [maven-release-plugin] prepare release inception-34.0
  No issue: Mention MS SQL and PosgreSQL as experimental DB options
  No issue: Fix versions after merge
  #5043 - Ability to specify token breaking zones when calling tokenizer
  #5064 - Project template for PHI annotation
  #5071 - Better document which layers are supported by which formats
  #5061 - Multiple synchronous recommenders only the last one wins
  #5064 - Project template for PHI annotation
  #5068 - Show annotation sidebar by default
  #5033 - Ability to configure recommenders interactively on the annotation page
  #5066 - Increase default number of rows for brat editors
  #5056 - Ability to configure additional languages for knowledge bases
  #4909 - Upgrade dependencies
  #5056 - Ability to configure additional languages for knowledge bases
  #4909 - Upgrade dependencies
  No issue: Actually, document-metadata doesn't seem to be experimental after all...
  No issue: Set version to 35.0-SNAPSHOT
  [maven-release-plugin] prepare for next development iteration
  [maven-release-plugin] prepare release inception-33.7
  ...

% Conflicts:
%	inception/inception-schema/src/main/java/de/tudarmstadt/ukp/inception/schema/exporters/LayerExporter.java
%	inception/inception-schema/src/main/java/de/tudarmstadt/ukp/inception/schema/exporters/TagSetExporter.java
%	inception/inception-ui-project/src/main/java/de/tudarmstadt/ukp/clarin/webanno/ui/project/layers/LayerDetailForm.java
%	inception/inception-ui-project/src/main/java/de/tudarmstadt/ukp/clarin/webanno/ui/project/layers/ProjectLayersPanel.java
reckart added a commit that referenced this issue Oct 1, 2024
@reckart
Merge branch 'main' into feature/2312-external-recommender-v2
168fd5e 
* main: (30 commits)
  [maven-release-plugin] prepare for next development iteration
  [maven-release-plugin] prepare release inception-34.0
  No issue: Mention MS SQL and PosgreSQL as experimental DB options
  No issue: Fix versions after merge
  #5043 - Ability to specify token breaking zones when calling tokenizer
  #5064 - Project template for PHI annotation
  #5071 - Better document which layers are supported by which formats
  #5061 - Multiple synchronous recommenders only the last one wins
  #5064 - Project template for PHI annotation
  #5068 - Show annotation sidebar by default
  #5033 - Ability to configure recommenders interactively on the annotation page
  #5066 - Increase default number of rows for brat editors
  #5056 - Ability to configure additional languages for knowledge bases
  #4909 - Upgrade dependencies
  #5056 - Ability to configure additional languages for knowledge bases
  #4909 - Upgrade dependencies
  No issue: Actually, document-metadata doesn't seem to be experimental after all...
  No issue: Set version to 35.0-SNAPSHOT
  [maven-release-plugin] prepare for next development iteration
  [maven-release-plugin] prepare release inception-33.7
  ...
reckart added a commit that referenced this issue Oct 1, 2024
@reckart
Merge branch 'main' into bugfix/4668-Rejecting-predictions-using-Apac…
9606617 
…he-Annotator-editor

* main: (330 commits)
  [maven-release-plugin] prepare for next development iteration
  [maven-release-plugin] prepare release inception-34.0
  No issue: Mention MS SQL and PosgreSQL as experimental DB options
  No issue: Fix versions after merge
  #5043 - Ability to specify token breaking zones when calling tokenizer
  #5064 - Project template for PHI annotation
  #5071 - Better document which layers are supported by which formats
  #5061 - Multiple synchronous recommenders only the last one wins
  #5064 - Project template for PHI annotation
  #5068 - Show annotation sidebar by default
  #5033 - Ability to configure recommenders interactively on the annotation page
  #5066 - Increase default number of rows for brat editors
  #5056 - Ability to configure additional languages for knowledge bases
  #4909 - Upgrade dependencies
  #5056 - Ability to configure additional languages for knowledge bases
  #4909 - Upgrade dependencies
  No issue: Actually, document-metadata doesn't seem to be experimental after all...
  No issue: Set version to 35.0-SNAPSHOT
  [maven-release-plugin] prepare for next development iteration
  [maven-release-plugin] prepare release inception-33.7
  ...
reckart added a commit that referenced this issue Oct 1, 2024
@reckart
Merge branch 'main' into bug/2824-Layer-name-with-special-characters-…
5b2931e 
…causes-problems-in-search

* main: (32 commits)
  [maven-release-plugin] prepare for next development iteration
  [maven-release-plugin] prepare release inception-34.0
  No issue: Mention MS SQL and PosgreSQL as experimental DB options
  No issue: Fix versions after merge
  #5043 - Ability to specify token breaking zones when calling tokenizer
  #5064 - Project template for PHI annotation
  #5071 - Better document which layers are supported by which formats
  #5061 - Multiple synchronous recommenders only the last one wins
  #5064 - Project template for PHI annotation
  #5068 - Show annotation sidebar by default
  #5033 - Ability to configure recommenders interactively on the annotation page
  #5066 - Increase default number of rows for brat editors
  #5056 - Ability to configure additional languages for knowledge bases
  #4909 - Upgrade dependencies
  #5056 - Ability to configure additional languages for knowledge bases
  #4909 - Upgrade dependencies
  No issue: Actually, document-metadata doesn't seem to be experimental after all...
  No issue: Set version to 35.0-SNAPSHOT
  [maven-release-plugin] prepare for next development iteration
  [maven-release-plugin] prepare release inception-33.7
  ...

% Conflicts:
%	inception/inception-ui-project/src/main/java/de/tudarmstadt/ukp/clarin/webanno/ui/project/layers/ProjectLayersPanel.html
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Milestone
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@reckart