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@inab

Spanish National Bioinformatics Institute

Alfonso Valencia | BSC, ICREA, INB Director - Salvador Capella-Gutierrez | BSC, INB CTO

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  1. trimal trimal Public

    A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

    C++ 203 47

  2. BIOLITMAP BIOLITMAP Public

    Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxford Bioinformatics.

    Python 20 3

  3. WfExS-backend WfExS-backend Public

    Workflow Execution Service Backend

    Python 18 6

  4. openVRE openVRE Public

    Open Virtual Research Environment

    JavaScript 9 3

  5. SmartRNASeqCaller SmartRNASeqCaller Public

    SmartRNASeqCaller is a post-processing pipeline to improve germline variant calling from RNA-Seq data

    Python 7 3

  6. rd-connect-cas-overlay rd-connect-cas-overlay Public archive

    Forked from UniconLabs/simple-cas4-overlay-template

    RD-Connect CAS overlay

    Shell 6 2

Repositories

Showing 10 of 205 repositories
  • trimal Public

    A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

    C++ 203 GPL-3.0 47 34 1 Updated Apr 19, 2025
  • wfexs_ega_fetcher Public

    WfExS-backend EGA fetcher

    0 Apache-2.0 0 0 0 Updated Apr 18, 2025
  • openVRE-core-dev Public

    Open Virtual Research Environment development version

    JavaScript 0 0 0 1 Updated Apr 17, 2025
  • research-software-etl Public

    Automated pipeline for extracting, normalizing, and integrating software metadata from diverse sources

    Python 0 AGPL-3.0 0 0 0 Updated Apr 17, 2025
  • software-id-benchmark Public

    Benchmarking suite for evaluating software metadata identity resolution using language models

    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Apr 17, 2025
  • docker-tes-proxy Public

    A docker shim which submits commands to a GA4GH TES service

    Python 0 Apache-2.0 0 0 0 Updated Apr 16, 2025
  • hello-workflows Public

    Repository to store toy "hello world"-like sample workflows for different workflow engines. Mainly to be consumed by WfExS tests

    Nextflow 0 MIT 0 0 0 Updated Apr 16, 2025
  • InSoLiTo Public Forked from SergiAguilo/InSoLiTo

    Inferring Social Life of Tools (InSoLiTo) is an OpenEBench project that provide guidance on scientific tools worth benchmarking

    Python 2 MIT 2 16 2 Updated Apr 15, 2025
  • WfExS-backend Public

    Workflow Execution Service Backend

    Python 18 Apache-2.0 6 24 1 Updated Apr 14, 2025
  • openEBench-nuxt-v3 Public

    OpenEBench Micro Frontends. Nuxt 3 version

    Vue 0 Apache-2.0 0 13 1 Updated Apr 14, 2025
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