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@dschwen dschwen commented Sep 30, 2025

Reason

A .bashrc_apptainer file in the user's home directory triggers a bug which leads to all but the first arguments in an apptainer exec call to be dropped. This for example breaks moose-dev-exec.

Design

Turns out that a typo in apptainer/files/mpi/.singularity.d/env/89-user-overrides.sh is responsible for this.

Impact

Fixing this will enable the currently broken override capability.

dschwen added a commit to dschwen/moose that referenced this pull request Sep 30, 2025
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dschwen commented Sep 30, 2025

This is not a high priority fix, so I suggest we merge it and not have a dedicated conda stack update for it.

@dschwen dschwen marked this pull request as ready for review September 30, 2025 13:56
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dschwen commented Sep 30, 2025

Oh, cool, that's not an option apparently...

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Job Precheck, step Versioner verify on b2cf115 wanted to post the following:

Versioner templates

Found 14 templates, 0 failed

Versioner influential files

Found 58 influential files, 10 changed, 0 added, 0 removed

package status file
mpi CHANGE apptainer/files/mpi
mpi CHANGE conda/mpi/meta.yaml
libmesh-vtk CHANGE conda/libmesh-vtk/conda_build_config.yaml
libmesh-vtk CHANGE conda/libmesh-vtk/meta.yaml
petsc CHANGE conda/petsc/conda_build_config.yaml
petsc CHANGE conda/petsc/meta.yaml
libmesh CHANGE conda/libmesh/conda_build_config.yaml
libmesh CHANGE conda/libmesh/meta.yaml
moose-dev CHANGE conda/moose-dev/conda_build_config.yaml
moose-dev CHANGE conda/moose-dev/meta.yaml

Versioner versions

Found 9 packages, 5 changed, 0 failed

package status hash to hash version to version
mpi CHANGE 37fd888 0ead4e3 2025.09.18 2025.10.13
libmesh-vtk CHANGE d384dc6 3d548b7 9.4.2 build 6 9.4.2 build 7
petsc CHANGE 6c94cfc 3aeaa84 3.23.4 build 1 3.23.4 build 2
libmesh CHANGE 748d6ae 70cf981 2025.09.18 build 0 2025.09.18 build 1
moose-dev CHANGE 32e04eb 40ac75b 2025.09.18 2025.10.13

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Job Documentation, step Docs: sync website on b2cf115 wanted to post the following:

View the site here

This comment will be updated on new commits.

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Job Coverage, step Generate coverage on b2cf115 wanted to post the following:

Framework coverage

99787a #31632 b2cf11
Total Total +/- New
Rate 85.93% 85.93% +0.00% -
Hits 122918 122919 +1 0
Misses 20123 20122 -1 0

Diff coverage report

Full coverage report

Modules coverage

Coverage did not change

Full coverage reports

Reports

This comment will be updated on new commits.

@GiudGiud GiudGiud added the PR: Updates packages Pull requsets that update versioner packahges label Oct 20, 2025
@GiudGiud GiudGiud assigned loganharbour and unassigned dschwen Oct 20, 2025
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PR: Updates packages Pull requsets that update versioner packahges

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4 participants