hoangmgh
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singlecell_GPU_pipeline Public
Some pipeline to runs single cell analysis on GPU
UpdatedMar 1, 2024 -
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imbalance-harmony-pytorch Public
Forked from lilab-bcb/harmony-pytorchPython BSD 3-Clause "New" or "Revised" License UpdatedDec 20, 2023 -
scWGCNA_pipeline Public
WGCNA processing pipeline and visualization for constructing pseudobulk single-cell gene networks
R UpdatedDec 19, 2023 -
souporcell_modified Public
Modified souporcell pipeline for better performance
Python UpdatedDec 18, 2023 -
cumulus-1 Public
Forked from lilab-bcb/cumulusCloud-based scalable and efficient single-cell genomics workflows
WDL BSD 3-Clause "New" or "Revised" License UpdatedAug 4, 2023 -
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pyliger Public
Forked from welch-lab/pyligerPython package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
Jupyter Notebook GNU General Public License v3.0 UpdatedFeb 21, 2023 -
randomly Public
Forked from RabadanLab/randomlyA Library for Denoising Single-Cell Data with Random Matrix Theory
Jupyter Notebook MIT License UpdatedFeb 12, 2023 -
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datatable Public
Forked from h2oai/datatableA Python package for manipulating 2-dimensional tabular data structures
C++ Mozilla Public License 2.0 UpdatedSep 1, 2022 -
pagoda2 Public
Forked from kharchenkolab/pagoda2R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
JavaScript UpdatedAug 26, 2022 -
scanpy_usage Public
Forked from scverse/scanpy_usageScanpy use cases.
HTML BSD 3-Clause "New" or "Revised" License UpdatedSep 4, 2020