Merge pull request #326 from hl7ch/develop

Develop

README.md

@@ -6,7 +6,7 @@
 
 * [CI Build master](https://build.fhir.org/ig/hl7ch/ch-lab-order/branches/master/index.html)
 * [CI Build develop](https://build.fhir.org/ig/hl7ch/ch-lab-order/branches/develop/index.html)
-* [CI Build IG-ohne-Q](https://build.fhir.org/ig/hl7ch/ch-lab-order/branches/IG-ohne-Q/index.html)
+* [CI Build 2.0.0-STU-ballot](https://build.fhir.org/ig/hl7ch/ch-lab-order/branches/2.0.0-STU-ballot/index.html)
 
 This is a HL7 Swiss FHIR implementation guide. It describes mainly two use cases of laboratory orders. 
 The first one composes the order by the choices given from the Laboratory Information System (LIS) and stores them in the FHIR resource ServiceRequest. 

ballots/2.0.0_STU2-ballot.md

@@ -93,7 +93,7 @@ The proposed solution consists of independent modules and can therefore be quick
 Proposal of a Rewording of each topic on https://build.fhir.org/ig/hl7ch/ch-lab-order/index.html#management-summary
 
 The lab-order should define the structure of the lab-order so it can be used by different laboratories and different providers of PIS, KIS or independent tool.
-1. the partly or fully filled electronic order should be safeble in the order filler system, so it can be changed until the samples are scanned by the receiver laboratory
+1. the partly or fully filled electronic order should be saveble in the order filler system, so it can be changed until the samples are scanned by the receiver laboratory
 2. practitionar, patient and treatment information should be transferable to the electronic order
 3. in the electronic order all available analyses should be presentable. a search option should be available. The content of profiles should be visible. 
 3a. in the electronic order analyses and profiles should be part of the order. Profiles eg for "blood count" are usually requested as profiles, the profiles are split to single analyses in the LIS (Laboratory Information System)

input/fsh/ALIASES.fsh

@@ -1,10 +1,12 @@
 // Terminologies, CodeSystems
 Alias:  $sct                           = http://snomed.info/sct
 Alias:  $loinc                         = http://loinc.org
+Alias:  $ucum                          = http://unitsofmeasure.org
 Alias:  $atc                           = http://www.whocc.no/atc
 Alias:  $v2-0203                       = http://terminology.hl7.org/CodeSystem/v2-0203
 Alias:  $v2-0038                       = http://terminology.hl7.org/CodeSystem/v2-0038  // orderStatus
 Alias:  $v2-0074                       = http://terminology.hl7.org/CodeSystem/v2-0074  // diagnosticServiceSectionId
+Alias:  $v2-0119                       = http://terminology.hl7.org/CodeSystem/v2-0119  // order control codes
 Alias:  $v2-0371                       = http://terminology.hl7.org/CodeSystem/v2-0371
 Alias:  $v2-0373                       = http://terminology.hl7.org/CodeSystem/v2-0373
 Alias:  $v2-0487                       = http://terminology.hl7.org/CodeSystem/v2-0487
@@ -23,11 +25,12 @@ Alias:  $condition-category            = http://terminology.hl7.org/CodeSystem/c
 Alias:  $substance-category            = http://terminology.hl7.org/CodeSystem/substance-category 
 Alias:  $report-codes                  = http://hl7.org/fhir/ValueSet/report-codes
 Alias:  $coverage-type                 = http://fhir.ch/ig/ch-orf/CodeSystem/ch-orf-cs-coveragetype // must by a CS!
+Alias:  $coverage-identifiertype       = http://fhir.ch/ig/ch-orf/CodeSystem/ch-orf-cs-coverageidentifiertype
 Alias:  $launchContext                 = http://hl7.org/fhir/uv/sdc/CodeSystem/launchContext
 Alias:  $microbiol-procedures          = http://fhir.ch/ig/ch-lab-order/ValueSet/MicrobiolProcedures
 Alias:  $shareablevalueset             = http://hl7.org/fhir/StructureDefinition/shareablevalueset
 Alias:  $launchContext                 = http://hl7.org/fhir/uv/sdc/CodeSystem/launchContext
-Alias:  $condition-clinical            = http://terminology.hl7.org/CodeSystem/condition-clinical
+// Alias:  $condition-clinical            = http://terminology.hl7.org/CodeSystem/condition-clinical
 // Alias:  $L-Forms                       = http://terminology.hl7.org/3.1.0/CodeSystem/forms-codes
 
 // ---- Patient
@@ -43,9 +46,7 @@ Alias:  $hcSpecialisation              = http://fhir.ch/ig/ch-epr-term/ValueSet/
 // Order
 Alias:  $request-priority              = http://hl7.org/fhir/request-priority
 Alias:  $servicerequest-categories     = http://fhir.ch/ig/ch-lab-order/CodeSystem/ch-lab-order-servicerequest-categories
-Alias:  $shareableValueSet             = http://hl7.org/fhir/StructureDefinition/shareablevalueset
-Alias:  $documentEntryClassCode        = http://fhir.ch/ig/ch-epr-term/ValueSet/DocumentEntry.classCode
-Alias:  $documentEntryTypeCode         = http://fhir.ch/ig/ch-epr-term/ValueSet/DocumentEntry.typeCode
+
 
 // Encounter, appointment
 Alias:  $CHCoreCSEncounterType         = http://fhir.ch/ig/ch-core/CodeSystem/bfs-medstats-21-encountertype

input/fsh/instances/CoverageFranzMuster.fsh

@@ -1,10 +1,11 @@
 Instance: CoverageFranzMuster
-InstanceOf: CHCoreCoverage
-Title: "Coverage: FranzMuster"
+InstanceOf: ChOrfCoverage
+Title: "Coverage FranzMuster"
 Description: "Example for Insurance Coverage"
 Usage: #example
 * meta.source = "https://www.ti.bfh.ch/de/bachelor/medizininformatik.html"
 * contained = Sanitas
+* identifier.type = $coverage-identifiertype#VeKa
 * identifier.system = "urn:oid:2.16.756.5.30.1.123.100.1.1.1"
 * identifier.value = "80756015090002640000"
 * status = #active

input/fsh/instances/DocumentEntry.classCode.fsh

@@ -1,3 +1,4 @@
+/*
 Instance: DocumentEntry.classCode
 InstanceOf: $shareableValueSet
 Usage: #example
@@ -32,4 +33,5 @@ Usage: #example
 * compose.include.concept.designation[+].language = #it-CH
 * compose.include.concept.designation[=].value = "Prescrizione di analisi"
 * compose.include.concept.designation[+].language = #en-US
-* compose.include.concept.designation[=].value = "Order"
+* compose.include.concept.designation[=].value = "Order"
+*/

input/fsh/instances/DocumentEntry.typeCode.fsh

@@ -1,3 +1,4 @@
+/*
 Instance: DocumentEntry.typeCode
 InstanceOf: $shareableValueSet
 Usage: #example
@@ -62,4 +63,6 @@ Usage: #example
 // * compose.include.concept[=].designation[+].language = #it-CH
 // * compose.include.concept[=].designation[=].value = "Referto istologico"
 // * compose.include.concept[=].designation[+].language = #en-US
-// * compose.include.concept[=].designation[=].value = "Pathology report"
+// * compose.include.concept[=].designation[=].value = "Pathology report"
+
+*/

input/fsh/instances/DocumentReference.fsh

@@ -20,7 +20,7 @@ Usage: #example
 * relatesTo.target = Reference(example)
 * description = "Physical"
 * securityLabel = $v3-Confidentiality#N "normal"
-* content.attachment.contentType = #application/hl7-v3+xml
+* content.attachment.contentType = #application/fhir+xml
 * content.attachment.language = #en-US
 * content.attachment.url = "http://example.org/xds/mhd/Binary/07a6483f-732b-461e-86b6-edb665c45510"
 * content.attachment.size = 3654

input/fsh/instances/HealthInsuranceCard.fsh

@@ -1,8 +1,9 @@
 Instance: HealthInsuranceCard
-InstanceOf: Coverage
-Title: "Coverage: HealthInsuranceCard Franz Muster"
+InstanceOf: ChOrfCoverage
+Title: "Covarage HealthInsuranceCard Franz Muster"
 Description: "Example for Insurance"
 Usage: #example
+* identifier.type = $coverage-identifiertype#VeKa
 * identifier.system = "http://ehic.com/insurer/123456789/member"
 * identifier.value = "A123456780"
 * status = #active

input/fsh/instances/LabOrder-CompositionWithSR.fsh

@@ -1,7 +1,7 @@
 Instance: LabOrder-CompositionWithSR
 InstanceOf: ChLabOrderCompositionWithSR
-Title: "CH LAB-Order Composition with Service Request"
-Description: "Composition multiple SR whithout Questionnaire/QuestionnaireResponse"
+Title: "CH LAB-Order Composition with ServiceRequest"
+Description: "Composition with ServiceRequest for Potassium"
 Usage: #example
 * id = "ch-lab-order-composition-with-sr"
 * meta.versionId = "1"

input/fsh/instances/LabOrder-CompositionWithSR_AndForm.fsh

@@ -1,7 +1,7 @@
 Instance: LabOrder-CompositionWithSR_AndForm
 InstanceOf: ChLabOrderCompositionWithSR_AndForm
 Title: "CH LAB-Order Composition with ServiceRequest and Form"
-Description: "Composition Questionnaire/QuestionnaireResponse and multiple SR"
+Description: "Composition with ServiceRequest and Questionnaire/QuestionnaireResponse"
 Usage: #example
 * id = "ch-lab-order-composition-with-sr-and-form"
 * meta.versionId = "1"

input/fsh/instances/LabOrder-Document-with-SR.fsh → input/fsh/instances/LabOrder-DocumentWithSR.fsh

@@ -1,7 +1,7 @@
 Instance: LabOrder-DocumentWithSR
 InstanceOf: ChLabOrderDocumentWithSR
-Title: "CH LAB-Order Document with Service Request"
-Description: "Document for referral/order due to suspected deep vein thrombosis"
+Title: "CH LAB-Order Document with ServiceRequest"
+Description: "Document for referral/order of Potassium in Serum"
 Usage: #example
 * id = "ch-lab-order-document-with-sr"
 * meta.versionId = "1"
@@ -38,8 +38,6 @@ Usage: #example
 
 * entry[+].fullUrl = "http://example.com/fhir/Practitioner/PeterPresto"
 * entry[=].resource = PeterPresto
-// * entry[+].fullUrl = "http://example.com/fhir/Organization/Gruppenpraxis"
-// * entry[=].resource = Gruppenpraxis
 * entry[+].fullUrl = "http://example.com/fhir/PractitionerRole/PeterPrestoGruppenpraxis"
 * entry[=].resource = PeterPrestoGruppenpraxis
 
@@ -49,17 +47,5 @@ Usage: #example
 * entry[+].fullUrl = "http://example.com/fhir/Specimen/Serum"
 * entry[=].resource = Serum
 
-// * entry[+].fullUrl = "http://example.com/fhir/Questionnaire/LabOrder-form" // entry[8]
-// * entry[=].resource = LabOrder-form
-// * entry[+].fullUrl = "http://example.com/fhir/QuestionnaireResponse/LabOrder-qr" //entry[9]
-// * entry[=].resource = LabOrder-QuestionnaireResponse
-
 * entry[+].fullUrl = "http://example.com/fhir/ServiceRequest/LabOrder-potassium"  // entry[10]
 * entry[=].resource = LabOrder-ServiceRequest-potassium
-// // ---- SR for Coagulation Tests ----
-// * entry[+].fullUrl = "http://example.com/fhir/ServiceRequest/LabOrder-coag"
-// * entry[=].resource = LabOrder-ServiceRequest-coag
-// 
-// // ---- SR for Coagulation Tests ----
-// * entry[+].fullUrl = "http://example.com/fhir/ServiceRequest/LabOrder-cc"
-// * entry[=].resource = LabOrder-ServiceRequest-cc

input/fsh/instances/LabOrder-Document-with-SR-and-Form.fsh → input/fsh/instances/LabOrder-DocumentwithSR_andForm.fsh

@@ -1,4 +1,4 @@
-Instance: LabOrder-Document-with-SR-and-Form
+Instance: LabOrder-DocumentwithSR_andForm
 InstanceOf: ChLabOrderDocumentWithSR_AndForm
 Title: "CH LAB-Order Document with ServiceRequest and Form"
 Description: "Document for referral/order due to suspected deep vein thrombosis"
@@ -38,8 +38,6 @@ Usage: #example
 
 * entry[+].fullUrl = "http://example.com/fhir/Practitioner/PeterPresto"
 * entry[=].resource = PeterPresto
-// * entry[+].fullUrl = "http://example.com/fhir/Organization/Gruppenpraxis"
-// * entry[=].resource = Gruppenpraxis
 * entry[+].fullUrl = "http://example.com/fhir/PractitionerRole/PeterPrestoGruppenpraxis"
 * entry[=].resource = PeterPrestoGruppenpraxis
 
@@ -53,14 +51,5 @@ Usage: #example
 * entry[=].resource = LabOrder-form
 * entry[+].fullUrl = "http://example.com/fhir/QuestionnaireResponse/LabOrder-qr" //entry[9]
 * entry[=].resource = LabOrder-QuestionnaireResponse
-
 * entry[+].fullUrl = "http://example.com/fhir/ServiceRequest/LabOrder-potassium"  // entry[10]
 * entry[=].resource = LabOrder-ServiceRequest-potassium
-
-// // ---- SR for Coagulation Tests ----
-// * entry[+].fullUrl = "http://example.com/fhir/ServiceRequest/LabOrder-coag"
-// * entry[=].resource = LabOrder-ServiceRequest-coag
-// 
-// // ---- SR for Coagulation Tests ----
-// * entry[+].fullUrl = "http://example.com/fhir/ServiceRequest/LabOrder-cc"
-// * entry[=].resource = LabOrder-ServiceRequest-cc

input/fsh/instances/LabOrder-ServiceRequest-chloride.fsh

@@ -1,6 +1,6 @@
 Instance: LabOrder-ServiceRequest-chloride
 InstanceOf: ChLabOrderSRSingletest
-Title: "CH LAB Service Request for Chloride"
+Title: "CH LAB-ServiceRequest for Chloride"
 Description: "Service Request for Chloride [Moles/volume] in Serum or Plasma"
 Usage: #example
 * id = "LabOrder-chloride"
@@ -9,27 +9,35 @@ Usage: #example
 * identifier[placerOrderIdentifier].value = "123"
 * instantiatesCanonical = "http://fhir.ch/ig/ch-lab-order/lab-compendium/ActivityDefinition/procedure-chloride-serum"
 
+* replaces = Reference(LabOrder-ServiceRequest-sodium)
+
 // ---- grouperID, must be repeated in all dependent SR ----
 * requisition.type = $v2-0203#PLAC "Placer Identifier"
 * requisition.system = "urn:oid:2.16.756.5.30"
 * requisition.value = "ReqID-1234567"
 
 * status = #active
 * intent = #original-order
-* category = $sct#721963009 "Order (record artifact)"
+// * category = $sct#721963009 "Order (record artifact)"
 
 // What is being ordered
 // * basedOn = Reference(SR-example)
 // ---- Clinical Chemistry Tests ----
-* code.coding[0] = $loinc#2075-0 "Chloride [Moles/volume] in Serum or Plasma"
+* code.coding.code = #2075-0
+* code.coding.system = $loinc
+* code.coding.display = "Chloride [Moles/volume] in Serum or Plasma"
 
-// orderDetails: Additional order information, codeableConcept
+// ---- orderDetails ----
+* orderDetail.coding.code = #NW
+* orderDetail.coding.system = $v2-0119
+* orderDetail.coding.display = "New order/service"
+* orderDetail.text = "Order Control code"
 
 * priority = #urgent
 * subject = Reference(Patient/HansGuggindieluft)
 * requester = Reference(MarcMustermannGruppenpraxis)
 * reasonCode = $sct#90688005
 * reasonCode.text = "Chronic renal failure syndrome (disorder)"
 * insurance = Reference(HealthInsuranceCard)
-* specimen[0] = Reference(Specimen/Serum) "Serum specimen"
+* specimen[+] = Reference(Specimen/Serum) "Serum specimen"
 // * specimen[+] = Reference(Specimen/Blood)

input/fsh/instances/LabOrder-ServiceRequest-container-example.fsh

@@ -1,7 +1,7 @@
 Instance: LabOrder-ServiceRequest-container-example
 InstanceOf: ChLabOrderSRContainer
-Title: "CH LAB Service Request for Creatinine Clearance and Electrolytes in Serum"
-Description: "Service Request as container for multiple Service Requests"
+Title: "Service Request as container for multiple Service Requests"
+Description: "CH LAB-ServiceRequest for Creatinine Clearance and Electrolytes in Serum"
 Usage: #example
 * id = "LabOrder-container-example"
 * identifier[placerOrderIdentifier].type = $v2-0203#PLAC "Placer Identifier"
@@ -19,13 +19,13 @@ Usage: #example
 
 * status = #active
 * intent = #original-order
-* category = $sct#721963009 "Order (record artifact)"
+// * category = $sct#721963009 "Order (record artifact)"
 
 * priority = #urgent
 * subject = Reference(Patient/HansGuggindieluft)
 * requester = Reference(MarcMustermannGruppenpraxis)
 * reasonCode = $sct#404223003
 * reasonCode.text = "Deep venous thrombosis of lower extremity"
 * insurance = Reference(HealthInsuranceCard)
-* specimen[0] = Reference(Specimen/Serum) "Serum specimen"
+* specimen[+] = Reference(Specimen/Serum) "Serum specimen"
 // * specimen[+] = Reference(Specimen/Blood)

input/fsh/instances/LabOrder-ServiceRequest-creatinine-clearance.fsh

@@ -1,6 +1,6 @@
 Instance: LabOrder-ServiceRequest-creatinine-clearance
 InstanceOf: ChLabOrderSRContainer
-Title: "CH LAB Service Request for Creatinine clearance"
+Title: "CH LAB-ServiceRequest for Creatinine clearance"
 Description: "Service Request for Creatinine [Moles/volume] and 24h Urin Creatinen"
 Usage: #example
 * id = "LabOrder-creatinine-clearance"
@@ -22,12 +22,14 @@ Usage: #example
 
 * status = #active
 * intent = #original-order
-* category = $sct#721963009 "Order (record artifact)"
+// * category = $sct#721963009 "Order (record artifact)"
 
 // What is being ordered
 // * basedOn = Reference(SR-example)
 // ---- Clinical Chemistry Tests ----
-* code.coding[0] = $loinc#2164-2 "Creatinine renal clearance in 24 hour Urine and Serum or Plasma"
+* code.coding.code = #2164-2
+* code.coding.system = $loinc
+* code.coding.display = "Creatinine renal clearance in 24 hour Urine and Serum or Plasma"
 
 // orderDetails: Additional order information, codeableConcept
 
@@ -39,12 +41,12 @@ Usage: #example
 * insurance = Reference(HealthInsuranceCard)
 * supportingInfo[+] = Reference(MedicationStatement/Diclofenac)
 * supportingInfo[+] = Reference(Condition/Renal-insufficiency)
-* specimen[0] = Reference(Specimen/Serum) "Serum specimen"
+* specimen[+] = Reference(Specimen/Serum) "Serum specimen"
 // * specimen[+] = Reference(Specimen/Blood)
 
 Instance: Diclofenac
 InstanceOf: MedicationStatement
-Title: "MedicationStatement: Diclofenac Verordnung"
+Title: "CH CoreMedicationStatement: Diclofenac Verordnung"
 Description: "Medication Record: Diclofenac"
 Usage: #example
 * status = #active
@@ -60,15 +62,17 @@ Usage: #example
 
 Instance: Voltaren
 InstanceOf: Medication
-Title: "Medication: Voltaren(product)"
+Title: "Medication Voltaren(product)"
 Description: "Example of a medication product"
 Usage: #example
 * contained = sub01
 * code = $sct#775563008 "Product containing only diclofenac (medicinal product)"
+* code.text = "VOLTAREN Drag 50 mg"
 * form = $sct#385055001 "Tablet (basic dose form)"
 * ingredient.itemReference = Reference(sub01)
-* ingredient.strength.numerator = 50 'mg'
-* ingredient.strength.denominator = 1 http://terminology.hl7.org/CodeSystem/v3-orderableDrugForm#TAB
+// * ingredient.strength.numerator = 50 'mg'
+* ingredient.strength.numerator = 50 'mg' "milligram"
+* ingredient.strength.denominator = 1 http://snomed.info/sct#732936001 "Tablet (unit of presentation)"
 
 Instance: sub01
 InstanceOf: Substance
@@ -78,7 +82,7 @@ Usage: #inline
 
 Instance: Renal-insufficiency
 InstanceOf: Condition
-Title: "Condition: Renal Insuffiency"
+Title: "Condition Renal Insuffiency"
 Description: "Problem or Diagnosis from problem list: Renal Insuffiency"
 Usage: #example
 * identifier.value = "12345"

input/fsh/instances/LabOrder-ServiceRequest-creatinine.fsh

@@ -1,6 +1,6 @@
 Instance: LabOrder-ServiceRequest-creatinine
 InstanceOf: ChLabOrderSRSingletest
-Title: "CH LAB Service Request for Serum Creatinine"
+Title: "CH LAB-ServiceRequest for Serum Creatinine"
 Description: "Service Request for Creatinine [Moles/volume] in Serum or Plasma"
 Usage: #example
 * id = "LabOrder-creatinine"
@@ -16,20 +16,23 @@ Usage: #example
 
 * status = #active
 * intent = #original-order
-* category = $sct#721963009 "Order (record artifact)"
+// * category = $sct#721963009 "Order (record artifact)"
 
 // What is being ordered
 // * basedOn = Reference(SR-example)
 // ---- Clinical Chemistry Tests ----
-* code.coding[0] = $loinc#14682-9 "Creatinine [Moles/volume] in Serum or Plasma"
+* code.coding.code = #14682-9 
+* code.coding.system = $loinc
+* code.coding.display = "Creatinine [Moles/volume] in Serum or Plasma"
 
-// orderDetails: Additional order information, codeableConcept
+// orderDetails: Additional order information
+// * orderDetail.coding = $v2-0119#NW "New order/service"
 
 * priority = #urgent
 * subject = Reference(Patient/HansGuggindieluft)
 * requester = Reference(MarcMustermannGruppenpraxis)
 * reasonCode = $sct#90688005
 * reasonCode.text = "Chronic renal failure syndrome (disorder)"
 * insurance = Reference(HealthInsuranceCard)
-* specimen[0] = Reference(Specimen/Serum) "Serum specimen"
+* specimen[+] = Reference(Specimen/Serum) "Serum specimen"
 // * specimen[+] = Reference(Specimen/Blood)