add files procedure-d-dimer and ArminAhrens

hl7ch · Nov 29, 2023 · 388e7b1 · 388e7b1
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diff --git a/README.md b/README.md
@@ -1,3 +1,5 @@
+<!-- markdownlint-disable MD001 MD033 MD041 -->
+
 # HL7 Swiss FHIR Implementation Guide for generic laboratory order forms
 
 ## CI Build
@@ -35,7 +37,7 @@ Order & Referral by Form - Implementation Guide (CH:ORF) <http://fhir.ch/ig/ch-o
 
 Download JDK from Oracle website:
 
-https://www.oracle.com/java/technologies/downloads/
+<https://www.oracle.com/java/technologies/downloads/>
 
 ```bash
 cat /etc/fedora-release   or $ cat /usr/lib/os-release
@@ -58,7 +60,6 @@ There are 3 programs which provide 'java'.
 Enter to keep the current selection[+], or type selection number: 
 ```
 
-
 ### IG Publisher
 
 Look at <https://confluence.hl7.org/display/FHIR/IG+Publisher+Documentation>
@@ -115,7 +116,7 @@ after running IG publisher:
 
 ## further procedure
 
-look at 'https://fhirblog.com/clinicians-on-fhir-workshop/'
+look at '<https://fhirblog.com/clinicians-on-fhir-workshop/>'
 
 1. Description of Problem (use cases from CDA-CH)
 
@@ -207,35 +208,35 @@ If a new release is ready, it needs to be tested again on the develop branch. Be
 ### LOINC for in vitro Diagnostics (LLIVD)
 
 DSTU2 U.S. Data Access Framework (DAF) DiagnosticOrder Profile
-'https://www.hl7.org/fhir/dstu2/daf/diagnosticorder-daf.html'
+'<https://www.hl7.org/fhir/dstu2/daf/diagnosticorder-daf.html>'
 
 Digital Format for Publication of LOINC to Vendor IVD Test Results by IICC:
 
-'http://ivdconnectivity.org/wp-content/uploads/delightful-downloads/2017/06/IICC_LIVD_Digital_Format_2017_06_01_R2.pdf'
+'<http://ivdconnectivity.org/wp-content/uploads/delightful-downloads/2017/06/IICC_LIVD_Digital_Format_2017_06_01_R2.pdf>'
 
 LIVD example bundle
 
-'http://hl7.org/fhir/uv/livd/2019Sep/livd-example.html'
+'<http://hl7.org/fhir/uv/livd/2019Sep/livd-example.html>'
 
-Roche qualitative LIVD example bundle 'http://hl7.org/fhir/uv/livd/2019Sep/livd-example-roche-qual.html#root'  
+Roche qualitative LIVD example bundle '<http://hl7.org/fhir/uv/livd/2019Sep/livd-example-roche-qual.html#root>'  
 
 ### Structured data capture
 
-'https://wiki.ihe.net/index.php/Retrieve_Form_for_Data_Capture'
+'<https://wiki.ihe.net/index.php/Retrieve_Form_for_Data_Capture>'
 
 ITI QRPH Supplement – Structured Data Capture:
-'https://ihe.net/uploadedFiles/Documents/QRPH/IHE_QRPH_Suppl_SDC.pdf'
+'<https://ihe.net/uploadedFiles/Documents/QRPH/IHE_QRPH_Suppl_SDC.pdf>'
 
-HL7 FHIR Implementation guide: 'http://hl7.org/fhir/uv/sdc/2018Sep/index.html'
+HL7 FHIR Implementation guide: '<http://hl7.org/fhir/uv/sdc/2018Sep/index.html>'
 
-Request for diagnostic report 'http://hl7.org/fhir/servicerequest.html'
+Request for diagnostic report '<http://hl7.org/fhir/servicerequest.html>'
 
 [Laboratory ask at order entry panel](https://loinc.org/89543-3)
 [Universal Lab Orders Value Set from LOINC](https://loinc.org/file-access/download-id/9825/)
 
 ### Order and Referral by Form (ORF)
 
-'http://build.fhir.org/ig/ahdis/ch-orf/'
+'<http://build.fhir.org/ig/ahdis/ch-orf/>'
 
 [LOINC Document Ontology](https://loinc.org/document-ontology/)
 

diff --git a/_updatePublisher.sh b/_updatePublisher.sh
@@ -117,13 +117,16 @@ if [[ $skipPrompts == true ]] || [[ $response =~ ^[yY].*$ ]]; then
 
   curl -L $gencont_sh_url -o /tmp/_gencontinuous.new
   cp /tmp/_gencontinuous.new _gencontinuous.sh
+  chmod +x _gencontinuous.sh
   rm /tmp/_gencontinuous.new
 
   curl -L $gen_sh_url -o /tmp/_genonce.new
   cp /tmp/_genonce.new _genonce.sh
+  chmod +x _genonce.sh
   rm  /tmp/_genonce.new
 
   curl -L $update_sh_url -o /tmp/_updatePublisher.new
   cp /tmp/_updatePublisher.new _updatePublisher.sh
+  chmod +x _updatePublisher.sh
   rm /tmp/_updatePublisher.new
 fi
diff --git a/input/fsh/ALIASES.fsh b/input/fsh/ALIASES.fsh
@@ -2,6 +2,7 @@
 Alias:  $sct                           = http://snomed.info/sct
 Alias:  $loinc                         = http://loinc.org
 Alias:  $v2-0203                       = http://terminology.hl7.org/CodeSystem/v2-0203
+Alias:  $v2-0038                       = http://terminology.hl7.org/CodeSystem/v2-0038  // orderStatus
 Alias:  $v2-0371                       = http://terminology.hl7.org/CodeSystem/v2-0371
 Alias:  $v2-0373                       = http://terminology.hl7.org/CodeSystem/v2-0373
 Alias:  $v2-0487                       = http://terminology.hl7.org/CodeSystem/v2-0487
@@ -16,6 +17,7 @@ Alias:  $launchContext                 = http://hl7.org/fhir/uv/sdc/CodeSystem/l
 Alias:  $microbiol-procedures          = http://fhir.ch/ig/ch-lab-order/ValueSet/MicrobiolProcedures
 Alias:  $shareablevalueset             = http://hl7.org/fhir/StructureDefinition/shareablevalueset
 Alias:  $launchContext                 = http://hl7.org/fhir/uv/sdc/CodeSystem/launchContext
+Alias:  $condition-clinical            = http://terminology.hl7.org/CodeSystem/condition-clinical
 // Alias:  $L-Forms                       = http://terminology.hl7.org/3.1.0/CodeSystem/forms-codes
 
 // ---- Patient

diff --git a/input/fsh/instances/LabOrder-ServiceRequest-container-example.fsh b/input/fsh/instances/LabOrder-ServiceRequest-container-example.fsh
@@ -1,6 +1,6 @@
 Instance: LabOrder-ServiceRequest-container-example
 InstanceOf: ChLabOrderSRContainer
-Title: "LabOrder Service Request for Electrolytes in Serum"
+Title: "LabOrder Service Request for Creatinine Clearance and Electrolytes in Serum"
 Description: "Example for Service Request as container for multiple Service Requests"
 Usage: #example
 * id = "LabOrder-container-example"

diff --git a/input/fsh/instances/LabOrder-ServiceRequest-creatinine-clearance.fsh b/input/fsh/instances/LabOrder-ServiceRequest-creatinine-clearance.fsh
@@ -1,13 +1,15 @@
 Instance: LabOrder-ServiceRequest-creatinine-clearance
-InstanceOf: ChLabOrderSRSingletest
+InstanceOf: ChLabOrderSRContainer
 Title: "LabOrder Service Request for Creatinine clearance"
 Description: "Example for Service Request of Creatinine [Moles/volume] and 24h Urin Creatinen"
 Usage: #example
 * id = "LabOrder-creatinine-clearance"
 * identifier[placerOrderIdentifier].type = $v2-0203#PLAC "Placer Identifier"
 * identifier[placerOrderIdentifier].system = "urn:oid:2.16.756.5.30"
 * identifier[placerOrderIdentifier].value = "123"
-* instantiatesCanonical = "http://fhir.ch/ig/ch-lab-order/lab-compendium/ActivityDefinition/procedure-creatinine-clearance"
+// * instantiatesCanonical = "http://fhir.ch/ig/ch-lab-order/lab-compendium/PlanDefinition/procedure-creatinine-clearance"
+
+* instantiatesCanonical = "http://fhir.ch/ig/ch-lab-order/lab-compendium/PlanDefinition/creatinine-clearance"
 
 // der SR referenziert auf 3 weitere SR
 * basedOn[0] = Reference(LabOrder-ServiceRequest-urine24h-creatinine)

diff --git a/input/fsh/instances/LabOrder-ServiceRequest-electrolytes.fsh b/input/fsh/instances/LabOrder-ServiceRequest-electrolytes.fsh
@@ -14,7 +14,7 @@ Usage: #example
 // der SR referenziert auf 3 weitere SR
 * basedOn[0] = Reference(LabOrder-ServiceRequest-sodium)
 * basedOn[+] = Reference(LabOrder-ServiceRequest-potassium)
-* basedOn[+] = Reference(LabOrder-ServiceRequest-chloride) // TODO
+* basedOn[+] = Reference(LabOrder-ServiceRequest-chloride)
 
 // ---- grouperID, must be repeated in all dependent SR ----
 * requisition.type = $v2-0203#PLAC "Placer Identifier"

diff --git a/input/fsh/instances/LabOrder-ServiceRequest-urine24h-creatinine.fsh b/input/fsh/instances/LabOrder-ServiceRequest-urine24h-creatinine.fsh
@@ -1,7 +1,7 @@
 Instance: LabOrder-ServiceRequest-urine24h-creatinine
 InstanceOf: ChLabOrderSRSingletest
 Title: "LabOrder Service Request for Clinical Chemistry Tests"
-Description: "Example for Service Request of Creatinine [Moles/volume] in Serum or Plasma"
+Description: "Example for Service Request of Creatinine [Moles/volume] in Urine"
 Usage: #example
 * id = "LabOrder-u24-creatinine"
 * identifier[placerOrderIdentifier].type = $v2-0203#PLAC "Placer Identifier"

diff --git a/input/fsh/instances/LabOrder-form.fsh b/input/fsh/instances/LabOrder-form.fsh
@@ -893,7 +893,7 @@ Usage: #example
 * item[=].item[=].item[=].item[=].item[=].item[=].answerOption[+].valueCoding = $sct#4598005 "Osteomalacia (disorder)"
 * item[=].item[=].item[=].item[=].item[=].item[=].answerOption[+].valueCoding = $sct#737295003 "Transplanted kidney present (finding)"
 * item[=].item[=].item[=].item[=].item[=].item[=].answerOption[+].valueCoding = $sct#707206008 "Assessment for bariatric surgery (procedure)"
-* item[=].item[=].item[=].item[=].item[=].item[=].answerOption[+].valueCoding = $sct#443731004 "Assessment using falls risk assessment score for the elderly (procedure)"
+* item[=].item[=].item[=].item[=].item[=].item[=].answerOption[+].valueCoding = $sct#443731004 "Assessment using Falls Risk Assessment Scale for the Elderly (procedure)"
 * item[=].item[=].item[=].item[=].item[=].item[=].answerOption[+].valueCoding = $sct#66999008 "Hyperparathyroidism (disorder)"
 
 // ---- choice of clinical focus

diff --git a/input/fsh/instances/lab-compendium/ActivityDefinition/procedure-d-dimer.fsh b/input/fsh/instances/lab-compendium/ActivityDefinition/procedure-d-dimer.fsh
@@ -0,0 +1,33 @@
+Instance: procedure-d-dimer
+InstanceOf: ActivityDefinition
+Description: "Service Short Fibrin D-dimer FEU and DDU panel"
+Usage: #example
+* meta.profile = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/LabProcedureDefinition"
+* language = #en-US
+* url = "http://fhir.ch/ig/ch-lab-order/lab-compendium/ActivityDefinition/procedure-d-dimer"
+* identifier.use = #official
+* identifier.value = "Cl_serum_test"
+* version = "0.1.0"
+* name = "D-DimerMeasurementProcedure"
+* title = "Procedure - d-dimer measurement on in vitro blood serum"
+* status = #draft
+* experimental = true
+* date = "2020-01-24T14:00:00+02:00"
+* contact.telecom.system = #url
+* contact.telecom.value = "http://hl7.org/Special/committees/orders"
+* description = "Chloride measurement procedure on in-vitro serum specimen"
+* jurisdiction = http://unstats.un.org/unsd/methods/m49/m49.htm#001
+* purpose = "This _ActivityDefinition_ specifies the input specimens and observations needed to perform chloride level test on serum, and the output observation. It is referenced by any _PlanDefinition_ representing a lab service focusing on this test."
+
+* effectivePeriod.start = "2020-04-01"
+* effectivePeriod.end = "2020-12-25"
+
+* topic[0] = $loinc#18720-3 "Coagulation studies (set)"  // LOINC Specialty code
+* topic[+] = $sct#86236002 "Circulating anticoagulant assay (procedure)" // not shure correct code
+
+* kind = #ServiceRequest
+* code = $loinc#91556-1 "Fibrin D-dimer DDU [Mass/volume] in Blood by Immunoassay"
+* priority = #routine
+* timingDuration = 30 'mn' "minutes"
+// * specimenRequirement = Reference(SpecimenDefinition/single-test-serum-venous)
+// * observationResultRequirement = Reference(ObservationDefinition/observation-serum-chloride)
diff --git a/.../fsh/instances/lab-compendium/ChargeItemDefinition/example-lab-billing-vitamind-focus.fsh b/.../fsh/instances/lab-compendium/ChargeItemDefinition/example-lab-billing-vitamind-focus.fsh
@@ -35,11 +35,11 @@ Usage: #example
 * useContext[=].valueCodeableConcept.text = "(Verdacht) nicht traumatische Fraktur"
 
 * useContext[+].code = http://terminology.hl7.org/CodeSystem/usage-context-type#focus
-* useContext[=].valueCodeableConcept = $sct#443731004 "Assessment using falls risk assessment score for the elderly (procedure)"
+* useContext[=].valueCodeableConcept = $sct#443731004 "Assessment using Falls Risk Assessment Scale for the Elderly (procedure)"
 * useContext[=].valueCodeableConcept.text = "Beurteilung und Behandlung nach unklarem Sturzereignis bei Patienten ≥ 65 Jahren"
 
 * useContext[+].code = http://terminology.hl7.org/CodeSystem/usage-context-type#focus
-* useContext[=].valueCodeableConcept = $sct#391040000 "At risk of osteoporotic fracture (finding)" // snomed CT: At increased risk of osteoporotic fracture (finding)
+* useContext[=].valueCodeableConcept = $sct#391040000 "At increased risk of osteoporotic fracture (finding)"
 * useContext[=].valueCodeableConcept.text = "bei anamnestisch erhöhtem Frakturrisiko bei Patienten ≥ 65 Jahre"
 
 * useContext[+].code = http://terminology.hl7.org/CodeSystem/usage-context-type#focus

diff --git a/input/fsh/instances/lab-compendium/PlanDefinition/Chloride-serum.fsh b/input/fsh/instances/lab-compendium/PlanDefinition/Chloride-serum.fsh
@@ -6,10 +6,10 @@ Usage: #example
 * language = #en-US
 * extension[0].url = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/CatalogReference"
 * extension[=].valueReference = Reference(Composition/Gantenbein-Catalog-Header)
-* extension[+].url = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/ServiceBillingCode"  // Analysen-Liste Code
-* extension[=].valueCodeableConcept = http://www.ama-assn.org/go/cpt#CPTfakecode "Chloride, serum"
+// * extension[+].url = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/ServiceBillingCode"  // Analysen-Liste Code
+// * extension[=].valueCodeableConcept = http://www.ama-assn.org/go/cpt#CPTfakecode "Chloride, serum"
 * extension[+].url = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/ServiceBillingCode"
-* extension[=].valueCodeableConcept = https://medcodesearch.ch/de/AL/laboratory_analyses#1229.00 "Chlorid"
+* extension[=].valueCodeableConcept = https://medcodesearch.ch/de/AL/laboratory_analyses#1229.00 "Chlorid"  // Analysen-Liste Code
 * extension[+].extension[0].url = "textualSummary"
 * extension[=].extension[=].valueMarkdown = "no notable particularity for billing"
 * extension[=].extension[+].url = "reimbursabilitySummary"

diff --git a/input/fsh/instances/lab-compendium/PlanDefinition/Creatinine-Clearance.fsh b/input/fsh/instances/lab-compendium/PlanDefinition/Creatinine-Clearance.fsh
@@ -16,7 +16,7 @@ Usage: #example
 * extension[=].url = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/BillingSummary"
 * extension[+].url = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/ScheduleSummary"
 * extension[=].valueString = "Daily ; report on D0"
-* url = "http://fhir.ch/ig/ch-lab-order/lab-compendium/PlanDefinition/creatinine-clearance"
+* url = "http://fhir.ch/ig/ch-lab-order/lab-compendium/PlanDefinition/creatinine-clearance" // Canonical identifier
 * version = "0.1.0"
 * name = "UrineCreatinineClearancePanel"
 * title = "24-hour urine creatinine clearance panel"
@@ -26,7 +26,7 @@ Usage: #example
 * date = "2020-02-12T19:00:00+01:00"
 * contact.telecom.system = #url
 * contact.telecom.value = "http://hl7.org/Special/committees/orders"
-* description = "This 24-hour urine creatinine clearance panel is reusing the procedures from the          serum creatinine test as well as the procedure from the 24h urine creatinine panel."
+* description = "This 24-hour urine creatinine clearance panel is reusing the procedures from the serum creatinine test as well as the procedure from the 24h urine creatinine panel."
 * useContext.code = http://terminology.hl7.org/CodeSystem/usage-context-type#task
 * useContext.valueCodeableConcept = $v3-ActCode#LABOE // "laboratory test order entry task"
 * useContext.valueCodeableConcept.text = "this panel is orderable"
@@ -54,6 +54,6 @@ Usage: #example
 * action.timingDuration = 2 'h' "hours"
 * action.groupingBehavior = #logical-group
 * action.selectionBehavior = #all
-* action.definitionCanonical = "http://fhir.ch/ig/ch-lab-order/lab-compendium/ActivityDefinition/procedure-urine24h-creatinine-clearance"
+* action.definitionCanonical           = "http://fhir.ch/ig/ch-lab-order/lab-compendium/ActivityDefinition/procedure-urine24h-creatinine-clearance"
 * action.action[0].definitionCanonical = "http://fhir.ch/ig/ch-lab-order/lab-compendium/ActivityDefinition/procedure-creatinine-serum"
 * action.action[+].definitionCanonical = "http://fhir.ch/ig/ch-lab-order/lab-compendium/ActivityDefinition/procedure-urine24h-creatinine"
diff --git a/input/fsh/instances/lab-compendium/PlanDefinition/Potassium-serum.fsh b/input/fsh/instances/lab-compendium/PlanDefinition/Potassium-serum.fsh
@@ -6,10 +6,10 @@ Usage: #example
 * language = #en-US
 * extension[0].url = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/CatalogReference"
 * extension[=].valueReference = Reference(Composition/Gantenbein-Catalog-Header)
-* extension[+].url = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/ServiceBillingCode"  
-* extension[=].valueCodeableConcept = http://www.ama-assn.org/go/cpt#CPTfakecode "Potassium, serum"
-* extension[+].url = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/ServiceBillingCode"  // Analysen-Liste Code
-* extension[=].valueCodeableConcept = https://medcodesearch.ch/de/AL/laboratory_analyses#1479.00
+// * extension[+].url = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/ServiceBillingCode"  
+// * extension[=].valueCodeableConcept = http://www.ama-assn.org/go/cpt#CPTfakecode "Potassium, serum"
+* extension[+].url = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/ServiceBillingCode"
+* extension[=].valueCodeableConcept = https://medcodesearch.ch/de/AL/laboratory_analyses#1479.00  // Analysen-Liste Code
 * extension[+].extension[0].url = "textualSummary"
 * extension[=].extension[=].valueMarkdown = "no notable particularity for billing"
 * extension[=].extension[+].url = "reimbursabilitySummary"

diff --git a/input/fsh/instances/lab-compendium/PlanDefinition/Sodium-serum.fsh b/input/fsh/instances/lab-compendium/PlanDefinition/Sodium-serum.fsh
@@ -6,10 +6,10 @@ Usage: #example
 * language = #en-US
 * extension[0].url = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/CatalogReference"
 * extension[=].valueReference = Reference(Composition/Gantenbein-Catalog-Header)
-* extension[+].url = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/ServiceBillingCode"  // Analysen-Liste Code
-* extension[=].valueCodeableConcept = http://www.ama-assn.org/go/cpt#CPTfakecode "Sodium, serum"
+// * extension[+].url = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/ServiceBillingCode"
+// * extension[=].valueCodeableConcept = http://www.ama-assn.org/go/cpt#CPTfakecode "Sodium, serum"
 * extension[+].url = "http://hl7.org/fhir/uv/order-catalog/StructureDefinition/ServiceBillingCode"
-* extension[=].valueCodeableConcept = https://medcodesearch.ch/de/AL/laboratory_analyses#1479.00 "Kalium Grosslabor"
+* extension[=].valueCodeableConcept = https://medcodesearch.ch/de/AL/laboratory_analyses#1479.00 "Kalium Grosslabor"   // Analysen-Liste Code
 * extension[+].extension[0].url = "textualSummary"
 * extension[=].extension[=].valueMarkdown = "no notable particularity for billing"
 * extension[=].extension[+].url = "reimbursabilitySummary"

diff --git a/input/fsh/instances/practitioner/ArminAhrens.fsh b/input/fsh/instances/practitioner/ArminAhrens.fsh
@@ -0,0 +1,25 @@
+Instance: ArminAhrens
+InstanceOf: CHCorePractitioner
+Title: "Armin Ahrens"
+Description: "Practitioner, works in Arztpraxis, refers to 6-histopath"
+Usage: #example
+* identifier[0].system = "urn:oid:2.51.1.3"
+* identifier[=].value = "7601000050700"
+* identifier[+].system = "urn:oid:2.16.756.5.30.1.123.100.2.1.1" // ZSR
+* identifier[=].value = "A123309"
+* name.use = #official
+* name.family = "Ahrens"
+* name.given = "Armin"
+* name.prefix = "Dr. med."
+* name.prefix.extension.url = "http://hl7.org/fhir/StructureDefinition/iso21090-EN-qualifier"
+* name.prefix.extension.valueCode = #AC
+* telecom[0].system = #phone
+* telecom[=].value = "033 123 22 11"
+* telecom[=].use = #work
+* telecom[+].system = #email
+* telecom[=].value = "[email protected]"
+* telecom[=].use = #work
+* qualification.code.coding.system = "urn:oid:2.16.756.5.30.1.127.3.5" 
+// CodeSystem: ch-ehealth-codesystem-medreg
+* qualification.code.coding.code = #1021
+* qualification.code.text = "Dermatology and venereology"
diff --git a/input/fsh/profiles/ChLabOrderDiagnosisCondition.fsh b/input/fsh/profiles/ChLabOrderDiagnosisCondition.fsh
@@ -10,7 +10,7 @@ Description: "Definition for the Diagnosis Condition resource in the context of
 Instance: ProblemItem-renal-failure
 InstanceOf: ChLabOrderDiagnosisCondition
 Description: "Problem or Diagnosis from problem list"
-
+* clinicalStatus = $condition-clinical#active
 * category.coding[0] = $sct#55607006 "Problem"
 * category.coding[+] = $condition-category#problem-list-item
 * code = $sct#90688005

diff --git a/input/fsh/profiles/ChLabOrderSRcontainer.fsh b/input/fsh/profiles/ChLabOrderSRcontainer.fsh
@@ -130,15 +130,16 @@ Usage: #example
 
 Instance: SR-CreaClearance
 InstanceOf: ChLabOrderSRContainer
-Title: "ChLabOrderSRContainer containing the Creatinin Clearance Panel"
+Title: "ChLabOrderSRContainer containing the Creatinine Clearance Panel"
 Description: "Example for Service Request for Creatinine-Clearance Container"
 Usage: #example
 * id = "CreaClearance"
 * identifier[placerOrderIdentifier].type = $v2-0203#PLAC "Placer Identifier"
 * identifier[placerOrderIdentifier].system = "urn:oid:2.16.756.5.30"
 * identifier[placerOrderIdentifier].value = "123"
 
-* instantiatesCanonical = "http://fhir.ch/ig/ch-lab-order/lab-compendium/PlanDefinition/Creatinine-Clearance"
+// * instantiatesCanonical = "http://fhir.ch/ig/ch-lab-order/lab-compendium/PlanDefinition/Creatinine-Clearance"
+* instantiatesCanonical = "http://fhir.ch/ig/ch-lab-order/lab-compendium/PlanDefinition/creatinine-clearance"
 
 * basedOn = Reference(SR-Creatinine-Serum)
 * basedOn = Reference(SR-Creatinine-24h-Urine)

diff --git a/input/pagecontent/casestudies-english.md b/input/pagecontent/casestudies-english.md
@@ -1,3 +1,5 @@
+<!-- markdownlint-disable MD001 MD033 MD041 -->
+
 ### Case study 1: Suspicion of deep vein thrombosis
 
 A patient, Hans Guggindieluft, presents to Dr. med. Marc Mustermann at the Olten group practice on 09.03.2016. He verbally identifies himself via his master data as Hans Guggindieluft, 01.01.1981. He reports unclear leg pain in the left lower leg as well as simultaneously occurring respiratory pain and cough. The doctor carries out the anamnesis and physical examination and prescribes the following laboratory parameters: