Release algV9.7 and progV3.5.2

hivdb · Nov 10, 2024 · c18e673 · c18e673
1 parent 70c2444
commit c18e673
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Showing 9 changed files with 6,192 additions and 5,791 deletions.
diff --git a/.latest-version b/.latest-version
@@ -1 +1 @@
-20240921052047
+20241110055209
diff --git a/build.gradle b/build.gradle
@@ -6,7 +6,7 @@ plugins {
 }
 
 group = 'edu.stanford.hivdb'
-version = '3.5.1'
+version = '3.5.2'
 
 sourceCompatibility = 15
 targetCompatibility = 15

diff --git a/hivfacts b/hivfacts
diff --git a/sierra-tests/build.gradle b/sierra-tests/build.gradle
@@ -5,7 +5,7 @@ plugins {
 }
 
 group = 'edu.stanford.hivdb'
-version = '3.5.1'
+version = '3.5.2'
 
 description = """Sierra Unit Tests"""
 

diff --git a/sierra-tests/src/test/java/edu/stanford/hivdb/hivfacts/HIVTest.java b/sierra-tests/src/test/java/edu/stanford/hivdb/hivfacts/HIVTest.java
@@ -229,8 +229,8 @@ public void testGetDrugSynonymMapWithException() {
 	@Test
 	public void testGetDrugResistAlgorithms() {
 		assertNotNull(hiv.getDrugResistAlgorithms());
-		// 20240309, 46 algorithms
-		assertEquals(46, hiv.getDrugResistAlgorithms().size());
+		// 20241109, 47 algorithms
+		assertEquals(47, hiv.getDrugResistAlgorithms().size());
 	}
 
 	@Test

diff --git a/sierra-tests/src/test/java/edu/stanford/hivdb/mutations/GenePositionTest.java b/sierra-tests/src/test/java/edu/stanford/hivdb/mutations/GenePositionTest.java
@@ -86,7 +86,7 @@ public void testGetDRGenePositions() {
     			new GenePosition<HIV>(hiv.getGene("HIV1PR"), 1),
     			new GenePosition<HIV>(hiv.getGene("HIV1IN"), 288)
     		);
-    	assertEquals(90, gps1.size());
+    	assertEquals(91, gps1.size());
     }
 
 

diff --git a/sierra-tests/src/test/java/edu/stanford/hivdb/viruses/VirusTest.java b/sierra-tests/src/test/java/edu/stanford/hivdb/viruses/VirusTest.java
@@ -47,13 +47,13 @@ public void testExtractMutationGenesInvaid() {
 
 	@Test
 	public void testGetLatestDrugResistAlgorithm() {
-		assertEquals("9.6", hiv.getLatestDrugResistAlgorithm("HIVDB").getVersion());
+		assertEquals("9.7", hiv.getLatestDrugResistAlgorithm("HIVDB").getVersion());
 		assertEquals("34", hiv.getLatestDrugResistAlgorithm("ANRS").getVersion());
 		assertEquals("10.0", hiv.getLatestDrugResistAlgorithm("Rega").getVersion());
 	}
 
 	@Test
 	public void testGetDefaultDrugResistAlgorithm() {
-		assertEquals("9.6", hiv.getDefaultDrugResistAlgorithm().getVersion());
+		assertEquals("9.7", hiv.getDefaultDrugResistAlgorithm().getVersion());
 	}
 }
diff --git a/sierra-tests/src/test/resources/AlgorithmComparisonTestExpecteds.json b/sierra-tests/src/test/resources/AlgorithmComparisonTestExpecteds.json
diff --git a/src/main/resources/version.properties b/src/main/resources/version.properties
@@ -1,2 +1,2 @@
-version = 3.5.1
-versionDate = 2024-09-20
+version = 3.5.2
+versionDate = 2024-11-09
+4,398 −0		data/algorithms/HIVDB_9.7.xml
+1 −1		data/algorithms/HIVDB_latest.xml
+5 −0		data/algorithms/versions.json
+1 −0		data/algorithms/versions.yml
+1 −1		data/alignment-config_hiv1.json
+2 −0		data/drms_hiv1.csv
+10 −0		data/drms_hiv1.json
+2,242 −2,242		data/patterns-hiv1/patterns-NNRTI.json