Update Oliveira22 #979 (#980)

* update values * update file names * update treatments, unclassified-rx * add preprint doi --------- Co-authored-by: Kaiming Tao <[email protected]>
hivdb · Sep 19, 2023 · f6d4e36 · f6d4e36
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diff --git a/tables/articles.csv b/tables/articles.csv
@@ -675,7 +675,7 @@ Heilmann22,10.1126/scitranslmed.abq7360,NULL,"Heilmann, E",2022,2022-11-07,NULL
 Ullrich22,10.1016/j.bmcl.2022.128629,NULL,"Ullrich, S",2022,2022-11-07,NULL
 Sasi22,10.1021/acs.biochem.2c00489,NULL,"Sasi, VM",2022,2022-11-08,NULL
 Noske23,10.1016/j.jbc.2023.103004,NULL,"Noske, GD",2023,2022-11-08,2023-03-31
-Oliveira22,10.1101/2022.07.31.502215,NULL,"Oliveira, VMD",2022,2022-11-08,NULL
+Oliveira23,10.1021/acs.jcim.3c00344,NULL,"Oliveira, VMD",2022,2022-11-08,2023-09-19
 FDA23-NTV,NULL,https://www.fda.gov/media/155050/download,FDA,2021,2022-11-08,2022-11-20
 Moghadasi22,10.1101/2022.08.07.503099,NULL,"Moghadasi, SA",2022,2022-11-09,NULL
 Miller23,10.1056/NEJMc2214314,NULL,"Miller, J",2023,2022-11-09,2023-04-04

diff --git a/tables/articles_preprint_doi.csv b/tables/articles_preprint_doi.csv
@@ -256,4 +256,5 @@ Akerman22,10.1101/2022.12.06.22283000
 Branche23,10.1101/2023.01.31.23285306
 Yamasoba23,10.1101/2023.04.06.535883
 Iketani22b,10.1101/2022.06.23.497404
+Oliveira23,10.1101/2022.07.31.502215
 Ou23,10.1101/2022.08.06.503039
diff --git a/...solate_mutations.d/oliveira22-isomuts.csv → ...solate_mutations.d/oliveira23-isomuts.csv b/...solate_mutations.d/oliveira22-isomuts.csv → ...solate_mutations.d/oliveira23-isomuts.csv
diff --git a/tables/isolates.d/oliveira22-iso.csv → tables/isolates.d/oliveira23-iso.csv b/tables/isolates.d/oliveira22-iso.csv → tables/isolates.d/oliveira23-iso.csv
diff --git a/tables/ref_isolate_pairs/oliveira22-pair.csv → tables/ref_isolate_pairs/oliveira23-pair.csv b/tables/ref_isolate_pairs/oliveira22-pair.csv → tables/ref_isolate_pairs/oliveira23-pair.csv
@@ -1,2 +1,2 @@
 ref_name,control_iso_name,iso_name
-Oliveira22,Wuhan-Hu-1,3CLpro:H172Y
+Oliveira23,Wuhan-Hu-1,3CLpro:H172Y
diff --git a/tables/rx_compounds/oliveira22-drug.csv b/tables/rx_compounds/oliveira22-drug.csv
diff --git a/tables/rx_compounds/oliveira23-drug.csv b/tables/rx_compounds/oliveira23-drug.csv
@@ -0,0 +1,2 @@
+ref_name,rx_name,drug_name
+Oliveira23,Nirmatrelvir,Nirmatrelvir
diff --git a/tables/rx_potency/oliveira22-pot.csv → tables/rx_potency/oliveira23-pot.csv b/tables/rx_potency/oliveira22-pot.csv → tables/rx_potency/oliveira23-pot.csv
@@ -1,5 +1,5 @@
 ref_name,rx_name,iso_name,section,assay_name,potency_type,potency,cumulative_count,potency_upper_limit,potency_lower_limit,potency_unit,date_added
-Oliveira22,Nirmatrelvir,Wuhan-Hu-1,Figure 4d,FRET,IC50,14.2,1,2000,0.1,nM,2022-11-08
-Oliveira22,Nirmatrelvir,3CLpro:H172Y,Figure 4d,FRET,IC50,344.2,1,2000,0.1,nM,2022-11-08
-Oliveira22,FRET substrate,Wuhan-Hu-1,Figure 4d,FRET,Kcat/Km,5355.3,1,NULL,NULL,s⁻¹M⁻¹,2022-11-08
-Oliveira22,FRET substrate,3CLpro:H172Y,Figure 4d,FRET,Kcat/Km,863.3,1,NULL,NULL,s⁻¹M⁻¹,2022-11-08
+Oliveira23,Nirmatrelvir,Wuhan-Hu-1,Figure 6d,FRET,IC50,14.2,1,2000,0.1,nM,2022-11-08
+Oliveira23,Nirmatrelvir,3CLpro:H172Y,Figure 6d,FRET,IC50,344.2,1,2000,0.1,nM,2022-11-08
+Oliveira23,FRET substrate,Wuhan-Hu-1,Figure 6d,FRET,Kcat/Km,5355.3,1,NULL,NULL,s⁻¹M⁻¹,2022-11-08
+Oliveira23,FRET substrate,3CLpro:H172Y,Figure 6d,FRET,Kcat/Km,863.3,1,NULL,NULL,s⁻¹M⁻¹,2022-11-08
diff --git a/tables/treatments.csv b/tables/treatments.csv
@@ -38136,7 +38136,7 @@ Musso22,Remdesivir
 Noske23,Nirmatrelvir
 Noske23,Ensitrelvir
 Nussenblatt21,Remdesivir
-Oliveira22,Nirmatrelvir
+Oliveira23,Nirmatrelvir
 Ou23,Nirmatrelvir
 Pitts22,Remdesivir 48 hpi
 Pitts22,Remdesivir 72 hpi
@@ -38207,7 +38207,7 @@ Drouin21,IVIG
 Andres22,Hyperimmune plasma
 Noske23,FRET substrate
 Ullrich22,FRET substrate
-Oliveira22,FRET substrate
+Oliveira23,FRET substrate
 Hu23,FRET substrate
 Ou23,FRET substrate
 Chen23b,FRET substrate

diff --git a/tables/unclassified-rx.csv b/tables/unclassified-rx.csv
@@ -16,7 +16,7 @@ Drouin21,IVIG
 Andres22,Hyperimmune plasma
 Noske23,FRET substrate
 Ullrich22,FRET substrate
-Oliveira22,FRET substrate
+Oliveira23,FRET substrate
 Hu23,FRET substrate
 Ou23,FRET substrate
 Chen23b,FRET substrate