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update Qu22d - 10.1016/j.chom.2022.11.012, resolve #654 (#870)
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* update Qu22d - 10.1016/j.chom.2022.11.012, resolve #654

* Autogenerated data updated by HIVDB Bot

---------

Co-authored-by: HIVDB Bot <[email protected]>
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@KaimingTao @hivdb-bot
KaimingTao and hivdb-bot authored Apr 5, 2023
1 parent 8862888 commit 8acd58c
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Showing 9 changed files with 113 additions and 71 deletions.
23 changes: 23 additions & 0 deletions excluded/rx_potency/qu22d-pot.csv
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ref_name,rx_name,iso_name,section,assay_name,potency_type,potency,cumulative_count,potency_upper_limit,potency_lower_limit,potency_unit,date_added
Qu22d,BA.1_wave,BA.4/5 Spike:K444T,Figure 3B,Pseudovirus (lentivirus),NT50,185,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.4/5 Spike:N460K,Figure 3B,Pseudovirus (lentivirus),NT50,118,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.4/5 Spike:N658S,Figure 3B,Pseudovirus (lentivirus),NT50,186,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.4/5 Spike:+R346T+K444T,Figure 3B,Pseudovirus (lentivirus),NT50,120,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.4/5 Spike:+R346T+N460K,Figure 3B,Pseudovirus (lentivirus),NT50,54,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.4/5 Spike:K444T,Figure 3C,Pseudovirus (lentivirus),NT50,105,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.4/5 Spike:N460K,Figure 3C,Pseudovirus (lentivirus),NT50,115,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.4/5 Spike:N658S,Figure 3C,Pseudovirus (lentivirus),NT50,204,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.4/5 Spike:+R346T+K444T,Figure 3C,Pseudovirus (lentivirus),NT50,109,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.4/5 Spike:+R346T+N460K,Figure 3C,Pseudovirus (lentivirus),NT50,103,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.2.75 Spike:+R346T,Figure 3E,Pseudovirus (lentivirus),NT50,197,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.2.75 Spike:+F486S,Figure 3E,Pseudovirus (lentivirus),NT50,127,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.2.75 Spike:+D1199N,Figure 3E,Pseudovirus (lentivirus),NT50,237,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.2.75 Spike:+R346T+F486S,Figure 3E,Pseudovirus (lentivirus),NT50,46,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.2.75 Spike:+R346T+D1199N,Figure 3E,Pseudovirus (lentivirus),NT50,116,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.2.75 Spike:+F486S+D1199N,Figure 3E,Pseudovirus (lentivirus),NT50,95,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.2.75 Spike:+R346T,Figure 3F,Pseudovirus (lentivirus),NT50,200,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.2.75 Spike:+F486S,Figure 3F,Pseudovirus (lentivirus),NT50,140,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.2.75 Spike:+D1199N,Figure 3F,Pseudovirus (lentivirus),NT50,219,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.2.75 Spike:+R346T+F486S,Figure 3F,Pseudovirus (lentivirus),NT50,75,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.2.75 Spike:+R346T+D1199N,Figure 3F,Pseudovirus (lentivirus),NT50,187,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.2.75 Spike:+F486S+D1199N,Figure 3F,Pseudovirus (lentivirus),NT50,157,15,100000,80,NULL,2022-10-24
2 changes: 1 addition & 1 deletion tables/articles.csv
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Expand Up @@ -660,7 +660,7 @@ Choi22b,10.1016/j.jinf.2022.09.018,NULL,"Choi, MJ",2022,2022-10-20,NULL
Shen22,10.1056/NEJMc2210648,NULL,"Shen, X",2022,2022-10-20,NULL
Andres22,10.1016/j.cmi.2022.08.021,NULL,"Andres, C",2022,2022-10-21,NULL
Ragonnet-Cronin22,10.1101/2022.07.14.500063,NULL,"Ragonnet-Cronin, M",2022,2022-10-21,NULL
Qu22d,10.1101/2022.10.19.512891,NULL,"Qu, P",2022,2022-10-24,NULL
Qu22d,10.1016/j.chom.2022.11.012,NULL,"Qu, P",2022,2022-10-24,2023-04-05
Hachmann22b,10.1056/NEJMc2212117,NULL,"Hachmann, NP",2022,2022-10-24,NULL
Park22,10.1126/science.adc9127,NULL,"Park, Y",2022,2022-10-24,NULL
Reynolds22,10.1126/science.abq1841,NULL,"Reynolds, C",2022,2022-10-24,NULL
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1 change: 1 addition & 0 deletions tables/articles_preprint_doi.csv
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Expand Up @@ -250,3 +250,4 @@ Kurhade23,10.1101/2022.10.31.514580
Miller23,10.1101/2022.11.01.514722
Wang22i,10.1101/2022.08.04.502716
Xie22,10.1101/2022.07.29.502055
Qu22d,10.1101/2022.10.19.512891
125 changes: 65 additions & 60 deletions tables/rx_potency/qu22d-pot.csv
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@@ -1,61 +1,66 @@
ref_name,rx_name,iso_name,section,assay_name,potency_type,potency,cumulative_count,potency_upper_limit,potency_lower_limit,potency_unit,date_added
Qu22d,mRNA_3dose,S:614G,Figure 1D,Pseudovirus (lentivirus),NT50,2616,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2 Spike,Figure 1D,Pseudovirus (lentivirus),NT50,759,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.4/5 Spike,Figure 1D,Pseudovirus (lentivirus),NT50,300,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.4.6 Spike,Figure 1D,Pseudovirus (lentivirus),NT50,246,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BF.7 Spike,Figure 1D,Pseudovirus (lentivirus),NT50,238,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BQ.1 Spike,Figure 1D,Pseudovirus (lentivirus),NT50,140,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BQ.1.1 Spike,Figure 1D,Pseudovirus (lentivirus),NT50,114,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75 Spike,Figure 1D,Pseudovirus (lentivirus),NT50,589,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75.2 Spike,Figure 1D,Pseudovirus (lentivirus),NT50,54,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,S:614G,Figure 1E,Pseudovirus (lentivirus),NT50,720,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.2 Spike,Figure 1E,Pseudovirus (lentivirus),NT50,439,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.4/5 Spike,Figure 1E,Pseudovirus (lentivirus),NT50,263,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.4.6 Spike,Figure 1E,Pseudovirus (lentivirus),NT50,205,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BF.7 Spike,Figure 1E,Pseudovirus (lentivirus),NT50,227,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BQ.1 Spike,Figure 1E,Pseudovirus (lentivirus),NT50,135,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BQ.1.1 Spike,Figure 1E,Pseudovirus (lentivirus),NT50,145,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.2.75 Spike,Figure 1E,Pseudovirus (lentivirus),NT50,186,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.2.75.2 Spike,Figure 1E,Pseudovirus (lentivirus),NT50,114,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,S:614G,Figure 1F,Pseudovirus (lentivirus),NT50,707,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.2 Spike,Figure 1F,Pseudovirus (lentivirus),NT50,341,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.4/5 Spike,Figure 1F,Pseudovirus (lentivirus),NT50,190,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.4.6 Spike,Figure 1F,Pseudovirus (lentivirus),NT50,180,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BF.7 Spike,Figure 1F,Pseudovirus (lentivirus),NT50,162,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BQ.1 Spike,Figure 1F,Pseudovirus (lentivirus),NT50,68,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BQ.1.1 Spike,Figure 1F,Pseudovirus (lentivirus),NT50,66,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.2.75 Spike,Figure 1F,Pseudovirus (lentivirus),NT50,210,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.2.75.2 Spike,Figure 1F,Pseudovirus (lentivirus),NT50,67,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.4/5 Spike:K444T,Figure 2C,Pseudovirus (lentivirus),NT50,212,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.4/5 Spike:N460K,Figure 2C,Pseudovirus (lentivirus),NT50,116,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.4/5 Spike:N658S,Figure 2C,Pseudovirus (lentivirus),NT50,273,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.4/5 Spike:+R346T+K444T,Figure 2C,Pseudovirus (lentivirus),NT50,229,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.4/5 Spike:+R346T+N460K,Figure 2E,Pseudovirus (lentivirus),NT50,109,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.4/5 Spike:K444T,Figure 2E,Pseudovirus (lentivirus),NT50,185,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.4/5 Spike:N460K,Figure 2E,Pseudovirus (lentivirus),NT50,118,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.4/5 Spike:N658S,Figure 2E,Pseudovirus (lentivirus),NT50,186,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.4/5 Spike:+R346T+K444T,Figure 2G,Pseudovirus (lentivirus),NT50,120,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.4/5 Spike:+R346T+N460K,Figure 2G,Pseudovirus (lentivirus),NT50,54,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.4/5 Spike:K444T,Figure 2G,Pseudovirus (lentivirus),NT50,105,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.4/5 Spike:N460K,Figure 2G,Pseudovirus (lentivirus),NT50,115,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.4/5 Spike:N658S,Figure 2G,Pseudovirus (lentivirus),NT50,204,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.4/5 Spike:+R346T+K444T,Figure 2G,Pseudovirus (lentivirus),NT50,109,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.4/5 Spike:+R346T+N460K,Figure 2G,Pseudovirus (lentivirus),NT50,103,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75 Spike:+R346T,Figure 2D,Pseudovirus (lentivirus),NT50,434,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75 Spike:+F486S,Figure 2D,Pseudovirus (lentivirus),NT50,114,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75 Spike:+D1199N,Figure 2D,Pseudovirus (lentivirus),NT50,459,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75 Spike:+R346T+F486S,Figure 2D,Pseudovirus (lentivirus),NT50,46,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75 Spike:+R346T+D1199N,Figure 2D,Pseudovirus (lentivirus),NT50,404,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75 Spike:+F486S+D1199N,Figure 2D,Pseudovirus (lentivirus),NT50,122,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.2.75 Spike:+R346T,Figure 2F,Pseudovirus (lentivirus),NT50,197,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.2.75 Spike:+F486S,Figure 2F,Pseudovirus (lentivirus),NT50,127,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.2.75 Spike:+D1199N,Figure 2F,Pseudovirus (lentivirus),NT50,237,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.2.75 Spike:+R346T+F486S,Figure 2F,Pseudovirus (lentivirus),NT50,46,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.2.75 Spike:+R346T+D1199N,Figure 2F,Pseudovirus (lentivirus),NT50,116,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave,BA.2.75 Spike:+F486S+D1199N,Figure 2F,Pseudovirus (lentivirus),NT50,95,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.2.75 Spike:+R346T,Figure 2H,Pseudovirus (lentivirus),NT50,200,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.2.75 Spike:+F486S,Figure 2H,Pseudovirus (lentivirus),NT50,140,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.2.75 Spike:+D1199N,Figure 2H,Pseudovirus (lentivirus),NT50,219,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.2.75 Spike:+R346T+F486S,Figure 2H,Pseudovirus (lentivirus),NT50,75,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.2.75 Spike:+R346T+D1199N,Figure 2H,Pseudovirus (lentivirus),NT50,187,15,100000,80,NULL,2022-10-24
Qu22d,BA.4/5 wave,BA.2.75 Spike:+F486S+D1199N,Figure 2H,Pseudovirus (lentivirus),NT50,157,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,S:614G,Figure 2A,Pseudovirus (lentivirus),NT50,2616,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2 Spike,Figure 2A,Pseudovirus (lentivirus),NT50,759,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.4/5 Spike,Figure 2A,Pseudovirus (lentivirus),NT50,300,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.4.6 Spike,Figure 2A,Pseudovirus (lentivirus),NT50,246,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BF.7 Spike,Figure 2A,Pseudovirus (lentivirus),NT50,238,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BQ.1 Spike,Figure 2A,Pseudovirus (lentivirus),NT50,140,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BQ.1.1 Spike,Figure 2A,Pseudovirus (lentivirus),NT50,114,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75 Spike,Figure 2A,Pseudovirus (lentivirus),NT50,589,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75.2 Spike,Figure 2A,Pseudovirus (lentivirus),NT50,54,15,100000,80,NULL,2022-10-24
Qu22d,BA.1_wave_unvaccinated,S:614G,Figure S2A,Pseudovirus (lentivirus),NT50,1441,6,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_unvaccinated,BA.2 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,451,6,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_unvaccinated,BA.4/5 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,254,6,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_unvaccinated,BA.4.6 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,180,6,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_unvaccinated,BF.7 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,178,6,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_unvaccinated,BQ.1 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,115,6,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_unvaccinated,BQ.1.1 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,98,6,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_unvaccinated,BA.2.75 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,193,6,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_unvaccinated,BA.2.75.2 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,69,6,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_2dose,S:614G,Figure S2A,Pseudovirus (lentivirus),NT50,378,5,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_2dose,BA.2 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,710,5,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_2dose,BA.4/5 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,398,5,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_2dose,BA.4.6 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,279,5,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_2dose,BF.7 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,388,5,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_2dose,BQ.1 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,194,5,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_2dose,BQ.1.1 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,194,5,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_2dose,BA.2.75 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,313,5,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_2dose,BA.2.75.2 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,205,5,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_3dose,S:614G,Figure S2A,Pseudovirus (lentivirus),NT50,568,4,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_3dose,BA.2 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,232,4,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_3dose,BA.4/5 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,165,4,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_3dose,BA.4.6 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,170,4,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_3dose,BF.7 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,169,4,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_3dose,BQ.1 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,108,4,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_3dose,BQ.1.1 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,183,4,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_3dose,BA.2.75 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,91,4,100000,80,NULL,2023-04-05
Qu22d,BA.1_wave_3dose,BA.2.75.2 Spike,Figure S2A,Pseudovirus (lentivirus),NT50,116,4,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_unvaccinated,S:614G,Figure S2B,Pseudovirus (lentivirus),NT50,634,17,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_unvaccinated,BA.2 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,294,17,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_unvaccinated,BA.4/5 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,167,17,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_unvaccinated,BA.4.6 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,160,17,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_unvaccinated,BF.7 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,143,17,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_unvaccinated,BQ.1 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,68,17,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_unvaccinated,BQ.1.1 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,67,17,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_unvaccinated,BA.2.75 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,195,17,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_unvaccinated,BA.2.75.2 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,57,17,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_3dose,S:614G,Figure S2B,Pseudovirus (lentivirus),NT50,1320,3,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_3dose,BA.2 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,788,3,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_3dose,BA.4/5 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,394,3,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_3dose,BA.4.6 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,354,3,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_3dose,BF.7 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,334,3,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_3dose,BQ.1 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,68,3,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_3dose,BQ.1.1 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,62,3,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_3dose,BA.2.75 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,326,3,100000,80,NULL,2023-04-05
Qu22d,BA.4/5 wave_3dose,BA.2.75.2 Spike,Figure S2B,Pseudovirus (lentivirus),NT50,176,3,100000,80,NULL,2023-04-05
Qu22d,mRNA_3dose,BA.4/5 Spike:K444T,Figure 3A,Pseudovirus (lentivirus),NT50,212,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.4/5 Spike:N460K,Figure 3A,Pseudovirus (lentivirus),NT50,116,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.4/5 Spike:N658S,Figure 3A,Pseudovirus (lentivirus),NT50,273,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.4/5 Spike:+R346T+K444T,Figure 3A,Pseudovirus (lentivirus),NT50,229,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.4/5 Spike:+R346T+N460K,Figure 3A,Pseudovirus (lentivirus),NT50,109,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75 Spike:+R346T,Figure 3D,Pseudovirus (lentivirus),NT50,434,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75 Spike:+F486S,Figure 3D,Pseudovirus (lentivirus),NT50,114,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75 Spike:+D1199N,Figure 3D,Pseudovirus (lentivirus),NT50,459,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75 Spike:+R346T+F486S,Figure 3D,Pseudovirus (lentivirus),NT50,46,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75 Spike:+R346T+D1199N,Figure 3D,Pseudovirus (lentivirus),NT50,404,15,100000,80,NULL,2022-10-24
Qu22d,mRNA_3dose,BA.2.75 Spike:+F486S+D1199N,Figure 3D,Pseudovirus (lentivirus),NT50,122,15,100000,80,NULL,2022-10-24
7 changes: 5 additions & 2 deletions tables/subject_infections/qu22d-inf.csv
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Original file line number Diff line number Diff line change
@@ -1,3 +1,6 @@
ref_name,subject_name,infection_date_cmp,infection_date,infected_var_name,location,immune_status,severity,section
Qu22d,BA.1_wave,~,2022-02-14,Omicron/BA.1,USA,NULL,NULL,Samples and Patient Information
Qu22d,BA.4/5 wave,~,2022-09-01,Omicron/BA.5,USA,NULL,NULL,Samples and Patient Information
Qu22d,BA.1_wave_unvaccinated,~,2022-02-14,Omicron/BA.1,USA,NULL,NULL,Samples and Patient Information
Qu22d,BA.1_wave_2dose,~,2022-02-14,Omicron/BA.1,USA,NULL,NULL,Samples and Patient Information
Qu22d,BA.1_wave_3dose,~,2022-02-14,Omicron/BA.1,USA,NULL,NULL,Samples and Patient Information
Qu22d,BA.4/5 wave_unvaccinated,~,2022-09-01,Omicron/BA.5,USA,NULL,NULL,Samples and Patient Information
Qu22d,BA.4/5 wave_3dose,~,2022-09-01,Omicron/BA.5,USA,NULL,NULL,Samples and Patient Information
7 changes: 5 additions & 2 deletions tables/subject_plasma/qu22d-plasma.csv
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Original file line number Diff line number Diff line change
@@ -1,4 +1,7 @@
ref_name,subject_name,rx_name,collection_date_cmp,collection_date,location,cumulative_group,section
Qu22d,mRNA_3dose,mRNA_3dose,~,2021-12-31,USA,mRNA_3dose,Samples and Patient Information
Qu22d,BA.1_wave,BA.1_wave,~,2022-02-14,USA,BA.1_wave,Samples and Patient Information
Qu22d,BA.4/5 wave,BA.4/5 wave,~,2022-09-01,USA,BA.4/5 wave,Samples and Patient Information
Qu22d,BA.1_wave_unvaccinated,BA.1_wave_unvaccinated,~,2022-02-14,USA,BA.1_wave_unvaccinated,Samples and Patient Information
Qu22d,BA.1_wave_2dose,BA.1_wave_2dose,~,2022-02-14,USA,BA.1_wave_2dose,Samples and Patient Information
Qu22d,BA.1_wave_3dose,BA.1_wave_3dose,~,2022-02-14,USA,BA.1_wave_3dose,Samples and Patient Information
Qu22d,BA.4/5 wave_unvaccinated,BA.4/5 wave_unvaccinated,~,2022-09-01,USA,BA.4/5 wave_unvaccinated,Samples and Patient Information
Qu22d,BA.4/5 wave_3dose,BA.4/5 wave_3dose,~,2022-09-01,USA,BA.4/5 wave_3dose,Samples and Patient Information
5 changes: 3 additions & 2 deletions tables/subject_vaccines/qu22d-vacc.csv
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@@ -1,4 +1,5 @@
ref_name,subject_name,vaccination_date_cmp,vaccination_date,vaccine_name,dosage,location,section
Qu22d,mRNA_3dose,~,2021-11-01,mRNA,3,USA,Samples and Patient Information
Qu22d,BA.1_wave,<,2022-02-01,Unknown vaccine,2,USA,Samples and Patient Information
Qu22d,BA.4/5 wave,<,2022-08-01,Unknown vaccine,3,USA,Samples and Patient Information
Qu22d,BA.1_wave_2dose,<,2021-07-01,mRNA,2,USA,Samples and Patient Information
Qu22d,BA.1_wave_3dose,<,2022-02-01,BNT162b2,3,USA,Samples and Patient Information
Qu22d,BA.4/5 wave_3dose,<,2022-08-01,mRNA,3,USA,Samples and Patient Information
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