rename to Omicron/EG.5 #49
Workflow file for this run
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| name: Release & pre-release | |
| on: | |
| push: | |
| tags: | |
| - '*' | |
| jobs: | |
| release: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| services: | |
| covid-drdb-devdb: | |
| image: postgres:latest | |
| env: | |
| POSTGRES_HOST_AUTH_METHOD: trust | |
| ports: | |
| - 5432:5432 | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| steps: | |
| - name: Checkout payload repository | |
| uses: actions/checkout@v3 | |
| with: | |
| path: covid-drdb-payload | |
| - name: Fetch payload tags | |
| run: | | |
| cd covid-drdb-payload | |
| git fetch --tags | |
| - name: Checkout covid-drdb repository | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: hivdb/covid-drdb | |
| path: covid-drdb | |
| - name: Integration | |
| env: | |
| POSTGRES_PORT: 5432 | |
| POSTGRES_HOST: localhost | |
| run: | | |
| set -e | |
| cd covid-drdb | |
| mkdir -p local/sqls | |
| docker run --rm -v="$(pwd)":/covid-drdb/ -v="$(dirname $(pwd))"/covid-drdb-payload:/covid-drdb/payload hivdb/covid-drdb-builder:latest scripts/export-sqls.sh | |
| psql -v ON_ERROR_STOP=1 -U postgres -h localhost -f local/sqls/01_schema.sql | |
| psql -v ON_ERROR_STOP=1 -U postgres -h localhost -f local/sqls/02_data_tables.sql | |
| psql -v ON_ERROR_STOP=1 -U postgres -h localhost -f local/sqls/03_derived_tables.sql | |
| - name: Publish release | |
| run: | | |
| cd covid-drdb | |
| docker run --shm-size=2048m --rm -v="$(pwd)":/covid-drdb/ -v="$(dirname $(pwd))"/covid-drdb-payload:/covid-drdb/payload -e GITHUB_TOKEN=${{ secrets.GITHUB_TOKEN }} --network=${{ job.container.network }} hivdb/covid-drdb-builder:latest scripts/github-release.sh ${{ github.ref_name }} | |
| - name: Sync to S3 | |
| run: | | |
| cd covid-drdb | |
| docker run --rm -v="$(pwd)":/covid-drdb/ -v="$(dirname $(pwd))"/covid-drdb-payload:/covid-drdb/payload -e GITHUB_TOKEN=${{ secrets.GITHUB_TOKEN }} -e AWS_DEFAULT_REGION=us-west-1 -e AWS_ACCESS_KEY_ID=${{ secrets.S3_ACCESS_KEY_ID }} -e AWS_SECRET_ACCESS_KEY=${{ secrets.S3_SECRET_ACCESS_KEY }} hivdb/covid-drdb-builder:latest scripts/sync-to-s3.sh ${{ github.ref_name }} |