CI #889
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| name: CI | |
| on: | |
| push: | |
| paths: | |
| - '**.jl' | |
| - '**.md' | |
| - 'Project.toml' | |
| pull_request: | |
| schedule: | |
| - cron: 0 1 * * 0 | |
| workflow_dispatch: | |
| concurrency: | |
| # Skip intermediate builds: always. | |
| # Cancel intermediate builds: only if it is a pull request build. | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }} | |
| jobs: | |
| test: | |
| name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }} | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: ${{ matrix.experimental || false }} | |
| # Avoid running this job multiple times for pull requests based on local branches | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name | |
| timeout-minutes: 60 | |
| permissions: # needed to allow julia-actions/cache to proactively delete old caches that it has created | |
| actions: write | |
| contents: read | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: | |
| - 'lts' | |
| - '1.11' | |
| - 'nightly' | |
| os: | |
| - ubuntu-latest | |
| arch: | |
| - x64 | |
| # Broken by dependency, cf. https://github.com/BioJulia/IndexableBitVectors.jl/issues/9 | |
| # - x86 | |
| include: | |
| - version: 'nightly' | |
| experimental: true | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ matrix.version }} | |
| arch: ${{ matrix.arch }} | |
| - uses: julia-actions/cache@v2 | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| - uses: julia-actions/julia-runtest@v1 | |
| docs: | |
| name: Documentation | |
| runs-on: ubuntu-latest | |
| # Avoid running this job multiple times for pull requests based on local branches | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name | |
| permissions: | |
| actions: write # needed to allow julia-actions/cache to proactively delete old caches that it has created | |
| contents: write | |
| statuses: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: '1' | |
| - uses: julia-actions/cache@v2 | |
| - name: Configure doc environment | |
| shell: julia --project=docs --color=yes {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(PackageSpec(path=pwd())) | |
| Pkg.instantiate() | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| - uses: julia-actions/julia-docdeploy@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Run doctests | |
| shell: julia --project=docs --color=yes {0} | |
| run: | | |
| using Documenter: DocMeta, doctest | |
| using BiochemicalAlgorithms | |
| DocMeta.setdocmeta!(BiochemicalAlgorithms, :DocTestSetup, :(using BiochemicalAlgorithms); recursive=true) | |
| doctest(BiochemicalAlgorithms) |