Merge branch 'release/0.4' #886
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| paths: | |
| - '**.jl' | |
| - '**.md' | |
| - 'Project.toml' | |
| pull_request: | |
| schedule: | |
| - cron: 0 1 * * 0 | |
| workflow_dispatch: | |
| concurrency: | |
| # Skip intermediate builds: always. | |
| # Cancel intermediate builds: only if it is a pull request build. | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }} | |
| jobs: | |
| test: | |
| name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }} | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: ${{ matrix.experimental || false }} | |
| # Avoid running this job multiple times for pull requests based on local branches | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name | |
| timeout-minutes: 60 | |
| permissions: # needed to allow julia-actions/cache to proactively delete old caches that it has created | |
| actions: write | |
| contents: read | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: | |
| - 'lts' | |
| - '1.11' | |
| - 'nightly' | |
| os: | |
| - ubuntu-latest | |
| arch: | |
| - x64 | |
| # Broken by dependency, cf. https://github.com/BioJulia/IndexableBitVectors.jl/issues/9 | |
| # - x86 | |
| include: | |
| - version: 'nightly' | |
| experimental: true | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ matrix.version }} | |
| arch: ${{ matrix.arch }} | |
| - uses: julia-actions/cache@v2 | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| - uses: julia-actions/julia-runtest@v1 | |
| docs: | |
| name: Documentation | |
| runs-on: ubuntu-latest | |
| # Avoid running this job multiple times for pull requests based on local branches | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name | |
| permissions: | |
| actions: write # needed to allow julia-actions/cache to proactively delete old caches that it has created | |
| contents: write | |
| statuses: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: '1' | |
| - uses: julia-actions/cache@v2 | |
| - name: Configure doc environment | |
| shell: julia --project=docs --color=yes {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop(PackageSpec(path=pwd())) | |
| Pkg.instantiate() | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| - uses: julia-actions/julia-docdeploy@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Run doctests | |
| shell: julia --project=docs --color=yes {0} | |
| run: | | |
| using Documenter: DocMeta, doctest | |
| using BiochemicalAlgorithms | |
| DocMeta.setdocmeta!(BiochemicalAlgorithms, :DocTestSetup, :(using BiochemicalAlgorithms); recursive=true) | |
| doctest(BiochemicalAlgorithms) |