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Do not read contig and filter header lines on VCF ingest (projectglow…
…#189) * Do not read contig and filter header lines on VCF ingest Signed-off-by: Karen Feng <[email protected]> * Cleanup Signed-off-by: Karen Feng <[email protected]> Signed-off-by: Henry Davidge <[email protected]>
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,7 @@ | ||
##fileformat=VCFv4.2 | ||
##FORMAT=<ID=AD,Number=1,Type=Integer,Description="Allelic depths for the ref and alt alleles in theorder listed"> | ||
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have beenfiltered"> | ||
##contig=<ID=1> | ||
##contig=<ID=2> | ||
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE1 | ||
1 1 a A G . . . AD 1,2 |