Automated migration test data #5218

SouradeepSahaSmile · 2023-08-18T15:22:05Z

Data Versions Added:

VersionEnum.V5_2_0
VersionEnum.V5_3_0
VersionEnum.V5_4_0
VersionEnum.V5_5_0
VersionEnum.V6_0_0
VersionEnum.V6_6_0

* Bump to core release 6.0.16 * Bump to core version 6.0.20 * Fix errors thrown as a result of VersionSpecificWorkerContextWrapper * Bump to core 6.0.22

…automatically indexes the primary key (#5127) * dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID * added changelog * changed to valid version number * changed to valid version number, need to be ordered by version number...

…ied (#5124) 5123 - Use DEFAULT partition for server-based requests if none specified

* added FIXME with source of issue * added FIXME with root cause * added FIXME with root cause * Providing solution to the issue and removing fixmes. * Providing changelog * auto-formatting. * Adding new test. * Adding a new test for standard paging * let's try this and see if it works...? * fix tests * cleanup to trigger a new run * fixing tests --------- Co-authored-by: Ken Stevens <[email protected]> Co-authored-by: peartree <[email protected]>

…ore (#5118) * fix, test, changelog * fix, test, changelog --------- Co-authored-by: justindar <[email protected]>

_source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers

…condition fail message. (#5156) * Initial failing test. * Solution with changelog. * fixing format. * Addressing comment from code review. * fixing failing test. --------- Co-authored-by: peartree <[email protected]>

Co-authored-by: leif stawnyczy <[email protected]>

Avoid non-included classes in jdbc driver dependencies.

* First commit with very rough fix and unit test. * Refinements to ResourceIdListStep and Batch2DaoSvcImpl. Make LoadIdsStepTest pass. Enhance Batch2DaoSvcImplTest. * Spotless * Fix checkstyle errors. * Fix test failures. * Minor refactoring. New unit test. Finalize changelist. * Spotless fix. * Delete now useless code from unit test. * Delete more useless code. * Test pre-commit hook * More spotless fixes. * Address most code review feedback. * Remove use of pageSize parameter and see if this breaks the pipeline. * Remove use of pageSize parameter and see if this breaks the pipeline. * Fix the noUrl case by passing an unlimited Pegeable instead. Effectively stop using page size for most databases. * Deprecate the old method and have it call the new one by default.

Co-authored-by: leif stawnyczy <[email protected]>

* _source search parameter modifiers for Subscription matching - test, implementation and changelog

* Initial failing test. * adding solution; fixing documentation; * spotless apply * adding changelog * modifying current test --------- Co-authored-by: peartree <[email protected]>

* Failing test * Also set offset and count in base DAO override * Changelog * Fix for specific case where count has been set in parameters * spotless * Improve checks --------- Co-authored-by: juan.marchionatto <[email protected]>

…ifferent ValueSets with colliding FHIR IDs (#5175) * First commit with failing unit test and small tweaks. * Swallow resource version exceptions from colliding ValueSet OIDs and log a descriptive error instead. Add more detailed unit testing. * Tweaks to logic and update the changelog. Reverse all changes to TermReadSvcImpl. * Revert PackageResourceParsingSvc to release branch baseline. * Accept code reviewer suggestion to change changelog description. Co-authored-by: michaelabuckley <[email protected]> --------- Co-authored-by: michaelabuckley <[email protected]>

…utomated-migration

# Conflicts: # hapi-deployable-pom/pom.xml # hapi-fhir-android/pom.xml # hapi-fhir-base/pom.xml # hapi-fhir-bom/pom.xml # hapi-fhir-checkstyle/pom.xml # hapi-fhir-cli/hapi-fhir-cli-api/pom.xml # hapi-fhir-cli/hapi-fhir-cli-app/pom.xml # hapi-fhir-cli/pom.xml # hapi-fhir-client-okhttp/pom.xml # hapi-fhir-client/pom.xml # hapi-fhir-converter/pom.xml # hapi-fhir-dist/pom.xml # hapi-fhir-docs/pom.xml # hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_mdm/mdm_rules.md # hapi-fhir-jacoco/pom.xml # hapi-fhir-jaxrsserver-base/pom.xml # hapi-fhir-jpa/pom.xml # hapi-fhir-jpaserver-base/pom.xml # hapi-fhir-jpaserver-elastic-test-utilities/pom.xml # hapi-fhir-jpaserver-hfql/pom.xml # hapi-fhir-jpaserver-ips/pom.xml # hapi-fhir-jpaserver-mdm/pom.xml # hapi-fhir-jpaserver-model/pom.xml # hapi-fhir-jpaserver-searchparam/pom.xml # hapi-fhir-jpaserver-subscription/pom.xml # hapi-fhir-jpaserver-test-dstu2/pom.xml # hapi-fhir-jpaserver-test-dstu3/pom.xml # hapi-fhir-jpaserver-test-r4/pom.xml # hapi-fhir-jpaserver-test-r4/src/test/java/ca/uhn/fhir/jpa/provider/r4/ExpungeR4Test.java # hapi-fhir-jpaserver-test-r4b/pom.xml # hapi-fhir-jpaserver-test-r5/pom.xml # hapi-fhir-jpaserver-test-utilities/pom.xml # hapi-fhir-jpaserver-uhnfhirtest/pom.xml # hapi-fhir-server-cds-hooks/pom.xml # hapi-fhir-server-mdm/pom.xml # hapi-fhir-server-openapi/pom.xml # hapi-fhir-server/pom.xml # hapi-fhir-serviceloaders/hapi-fhir-caching-api/pom.xml # hapi-fhir-serviceloaders/hapi-fhir-caching-caffeine/pom.xml # hapi-fhir-serviceloaders/hapi-fhir-caching-guava/pom.xml # hapi-fhir-serviceloaders/hapi-fhir-caching-testing/pom.xml # hapi-fhir-serviceloaders/pom.xml # hapi-fhir-spring-boot/hapi-fhir-spring-boot-autoconfigure/pom.xml # hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/hapi-fhir-spring-boot-sample-client-apache/pom.xml # hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/hapi-fhir-spring-boot-sample-client-okhttp/pom.xml # hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/hapi-fhir-spring-boot-sample-server-jersey/pom.xml # hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/pom.xml # hapi-fhir-spring-boot/hapi-fhir-spring-boot-starter/pom.xml # hapi-fhir-spring-boot/pom.xml # hapi-fhir-sql-migrate/pom.xml # hapi-fhir-storage-batch2-jobs/pom.xml # hapi-fhir-storage-batch2-test-utilities/pom.xml # hapi-fhir-storage-batch2/pom.xml # hapi-fhir-storage-cr/pom.xml # hapi-fhir-storage-mdm/pom.xml # hapi-fhir-storage-test-utilities/pom.xml # hapi-fhir-storage/pom.xml # hapi-fhir-structures-dstu2.1/pom.xml # hapi-fhir-structures-dstu2/pom.xml # hapi-fhir-structures-dstu3/pom.xml # hapi-fhir-structures-hl7org-dstu2/pom.xml # hapi-fhir-structures-r4/pom.xml # hapi-fhir-structures-r4b/pom.xml # hapi-fhir-structures-r5/pom.xml # hapi-fhir-test-utilities/pom.xml # hapi-fhir-testpage-overlay/pom.xml # hapi-fhir-validation-resources-dstu2.1/pom.xml # hapi-fhir-validation-resources-dstu2/pom.xml # hapi-fhir-validation-resources-dstu3/pom.xml # hapi-fhir-validation-resources-r4/pom.xml # hapi-fhir-validation-resources-r4b/pom.xml # hapi-fhir-validation-resources-r5/pom.xml # hapi-fhir-validation/pom.xml # hapi-tinder-plugin/pom.xml # hapi-tinder-test/pom.xml # pom.xml # tests/hapi-fhir-base-test-jaxrsserver-kotlin/pom.xml # tests/hapi-fhir-base-test-mindeps-client/pom.xml # tests/hapi-fhir-base-test-mindeps-server/pom.xml

github-actions · 2023-08-18T15:23:31Z

Formatting check succeeded!

...fhir-jpaserver-test-utilities/src/main/java/ca/uhn/fhir/jpa/embedded/H2EmbeddedDatabase.java

...jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/embedded/HapiSchemaMigrationTest.java

codecov · 2023-08-18T21:45:54Z

Codecov Report

Patch coverage has no change and project coverage change: +1.43% 🎉

Comparison is base (2f5ffe7) 81.32% compared to head (19533bd) 82.75%.
Report is 265 commits behind head on master.

❗ Current head 19533bd differs from pull request most recent head 6fc4943. Consider uploading reports for the commit 6fc4943 to get more accurate results

Additional details and impacted files

@@             Coverage Diff              @@
##             master    #5218      +/-   ##
============================================
+ Coverage     81.32%   82.75%   +1.43%     
- Complexity    23650    26255    +2605     
============================================
  Files          1425     1605     +180     
  Lines         86399   102202   +15803     
  Branches      11677    13098    +1421     
============================================
+ Hits          70265    84579   +14314     
- Misses        10947    11996    +1049     
- Partials       5187     5627     +440

see 1615 files with indirect coverage changes

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

tadgh and others added 30 commits July 21, 2023 16:33

version bump

902df2d

Bump to core release 6.0.22 (#5028)

9a996ce

* Bump to core release 6.0.16 * Bump to core version 6.0.20 * Fix errors thrown as a result of VersionSpecificWorkerContextWrapper * Bump to core 6.0.22

5123 - Use DEFAULT partition for server-based requests if none specif…

ff507cd

…ied (#5124) 5123 - Use DEFAULT partition for server-based requests if none specified

5117 MDM Score for No Match Fields Should Not Be Included in Total Sc…

e077393

…ore (#5118) * fix, test, changelog * fix, test, changelog --------- Co-authored-by: justindar <[email protected]>

wip run 5.2.0 migrations and then add test data

03e7d73

Fix h2

0be8da4

Fix postgres

8676556

Complete until v5.4

dcbf8e2

add sql migration scripts:

e9298ee

Temp

fb13ec2

Add v6_0_0

a1353cf

Add v6_8_0

4229c86

Final changes

38b6988

clean up

d2209ce

_source search parameter needs to support modifiers (#5095)

4ec17c9

_source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers

Fix HFQL docs (#5151)

ca2c7bd

documentation update (#5154)

d970ca5

Co-authored-by: leif stawnyczy <[email protected]>

Fix hsql jdbc driver deps (#5168)

f82da96

Avoid non-included classes in jdbc driver dependencies.

updating documentation (#5170)

f6f855b

Co-authored-by: leif stawnyczy <[email protected]>

_source search parameter modifiers for Subscription matching (#5159)

4cd93fd

* _source search parameter modifiers for Subscription matching - test, implementation and changelog

Complete Oracle

112dfcd

Remove V6_8_0

91ba93c

apply mvn: spotless

4b04bc8

Removal of meta tags during updates do not trigger subscription (#5181)

a6d64bf

* Initial failing test. * adding solution; fixing documentation; * spotless apply * adding changelog * modifying current test --------- Co-authored-by: peartree <[email protected]>

SouradeepSahaSmile added 2 commits August 9, 2023 10:31

Merge remote-tracking branch 'origin/rel_6_8' into nd-ss-2023-07-27-a…

2ee1268

…utomated-migration

steve-corbett-smilecdr reviewed Aug 18, 2023

View reviewed changes

...fhir-jpaserver-test-utilities/src/main/java/ca/uhn/fhir/jpa/embedded/H2EmbeddedDatabase.java Show resolved Hide resolved

nathandoef requested changes Aug 18, 2023

View reviewed changes

...jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/embedded/HapiSchemaMigrationTest.java Outdated Show resolved Hide resolved

SouradeepSahaSmile added 2 commits August 22, 2023 12:48

Update CDR insert tables

5be847d

Update CDR insert tables

6fc4943

nathandoef approved these changes Aug 23, 2023

View reviewed changes

nathandoef merged commit ed616f7 into master Aug 23, 2023

nathandoef deleted the ss-automated-migration branch August 23, 2023 14:27

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Uh oh!

Automated migration test data #5218

Automated migration test data #5218

Uh oh!

SouradeepSahaSmile commented Aug 18, 2023

Uh oh!

github-actions bot commented Aug 18, 2023

Uh oh!

Uh oh!

Uh oh!

codecov bot commented Aug 18, 2023 •

edited

Loading

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

14 participants

Automated migration test data #5218

Automated migration test data #5218

Uh oh!

Conversation

SouradeepSahaSmile commented Aug 18, 2023

Uh oh!

github-actions bot commented Aug 18, 2023

Uh oh!

Uh oh!

Uh oh!

codecov bot commented Aug 18, 2023 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Codecov Report

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

14 participants

codecov bot commented Aug 18, 2023 •

edited

Loading