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6.6.0 Mergeback #4924
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            6.6.0 Mergeback #4924
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    * fix RestHookTestR5IT * fix intermittent --------- Co-authored-by: Ken Stevens <[email protected]>
* Fix Oracle SQL error * Add changelog
* Update clinical reasoning version * Update version * Update version * Clean-up and more wireup of evaluationSettings * Add changelog --------- Co-authored-by: Jonathan Percival <[email protected]>
Co-authored-by: Chalma Maadaadi <[email protected]>
Co-authored-by: Long Ma <[email protected]>
* Update the changelog for 4697 to be more descriptive * Futher tweaks of the changelog
* Test, fix * Drop constraint, add migration * Add changelog * Fix userSelected null vs false * Fix merge * Fix up checkstyle whining * One more failure * Fix test * wip * changelog clarity Co-authored-by: James Agnew <[email protected]> * change index --------- Co-authored-by: Michael Buckley <[email protected]> Co-authored-by: James Agnew <[email protected]>
Co-authored-by: Ken Stevens <[email protected]>
Co-authored-by: leif stawnyczy <[email protected]>
* fix bug * Favoring constructor initialization to autowiring. * enhancing test. * Making class LoggingEmailSender available outside of the hapi-fhir-japserver-uhnfhirtest module. * Passing all tests. * adding changelog. * Bumping version to 6.5.20-SNAPSHOT * addressing code review comment. --------- Co-authored-by: peartree <[email protected]>
* Add docs for CR operations * Correct changelog and javadoc for $package * Add documentation for $apply parameters * Add additional documentation for $package * Cleanup * Cleanup * Cleanup * Address review comments
* Add documentation for -gaps. * addressing the comments. --------- Co-authored-by: Chalma Maadaadi <[email protected]>
…splay defined in the codesystem 2 (#4854) * added failing test * implemented the solution * changed test name * added change log * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_6_0/4853-validation-does-not-error-when-display-is-not-the-same-as-the-display-defined-in-the-codesystem-2.yaml Co-authored-by: James Agnew <[email protected]> --------- Co-authored-by: Steven Li <[email protected]> Co-authored-by: James Agnew <[email protected]>
* fixing patient everything operator * review fix --------- Co-authored-by: leif stawnyczy <[email protected]>
…ion will fail with HAPI-2207 (#4871) * Add failing unit test. * Fix JpaId Long equality comparison to use ! equals() instead of !=, which fails for different instances of the same Long value. * Add changelog.
* added warn message and test * code review fixes --------- Co-authored-by: Long Ma <[email protected]>
* version bump for next release (#4793) * version bump * Bump to correctnumber * Version Enum and folder * Remove interim from list * wip * Fix operation on nested type-choices in FhirPatch implementation (#4783) * Fix operation on nested type-choices in FhirPatch implementation * Add credit for #4783 --------- Co-authored-by: James Agnew <[email protected]> * #4468 fix previous link offset no cache pagination (#4489) * #4468 Add test reproducing the issue * #4468 Fix previous link for no cache offset pagination * #4468 Use unchecked URI parsing * Credit for #4489 --------- Co-authored-by: James Agnew <[email protected]> * Changelog and data generating test * Add MdmLink index * Avoid double link deletion * Use ThreadLocal safely --------- Co-authored-by: Tadgh <[email protected]> Co-authored-by: Zach Smith <[email protected]> Co-authored-by: James Agnew <[email protected]> Co-authored-by: Aleksej Parovysnik <[email protected]> Co-authored-by: juan.marchionatto <[email protected]>
…LETE (#4859) * Add failing unit test. * Add conditional logic to the InstanceProgress progress percentage to disregard the incomplete count if this is called from the reduction step. This is to get around a race condition in which a work chunk is QUEUED and not yet complete when the reduction step calculates the progress. * Add final. * Add changelog.
Co-authored-by: Ken Stevens <[email protected]>
* fixing some offset and adding a test * fixing the offset paging * Removing duplicate --------- Co-authored-by: leif stawnyczy <[email protected]> Co-authored-by: Aleksej Parovysnik <[email protected]>
…PREFIX-pointcut (#4876) * Add failing test * Add failing test * Fix and changelog * Pass content type parameter * Back to auto wiring the context * Invoke interceptor only when getting blobId, not also when storing it * Avoid breaking implementers * Address review comment * Add new exception Msg code * Fix broken test --------- Co-authored-by: juan.marchionatto <[email protected]>
* Remove racy stats recalc.
…patibility (#4894) Co-authored-by: juan.marchionatto <[email protected]>
* Test, fix, and changelog * Better partition resolution * Add checks based on rule applier * Fix ordering failure due to hash set * Allow empty auth interceptor * Fix up operation type on invocation * Add more tests, make hack implementation for patient instance level operation * Tighten test name * Changelog * Default method * remove dead method * Remove dead autowire --------- Co-authored-by: Michael Buckley <[email protected]>
Co-authored-by: Long Ma <[email protected]>
* updating tests * fixing bulk export to not fetch resources not requested * cleanup * cleanup * more warning suppressing * adding error code * blah * fix test * review fixes --------- Co-authored-by: leif stawnyczy <[email protected]>
* cve pom changes * bump javax.el to jakarta.el --------- Co-authored-by: Long Ma <[email protected]>
…rage preshow resources (#4906) * Initial failing test * Avoid applying binary blob id prefix multiple times * Remove recently introduced method not needed anymore --------- Co-authored-by: juan.marchionatto <[email protected]>
* repro bug with test, fix bug * ken informed me he resolved this bug on master, so i'm switching to use his solution * disable wars * review feedback * review feedback * review feedback again --------- Co-authored-by: josie <[email protected]> Co-authored-by: Ken Stevens <[email protected]>
…t account for search parameters for custom resources types when converting dstu23 into runtimesearchparam (#4887) * Modified canonicalizeSearchParameterDstu2 and 3, now correctly detect search parameters for custom resources * Canonicalizers now correctly handle search parameters for custom resources * created changelog * Modification based on comments: - remove Resource from target field when there are custom resource types - fixed changelog typo - removed unnecessary variable providesMembershipInCompartments * Added tests for the SearchParameterCanonicalizer to test if base and target of RuntimeSearchParam is set as expected for DSTU2, DSTU3, R4, R4B, and R5 resources * Fixed typo and removed commented code * re-ordered init methods * Update changelog Co-authored-by: Tadgh <[email protected]> * modifications following first code review. --------- Co-authored-by: Tadgh <[email protected]> Co-authored-by: peartree <[email protected]>
Remove _lastUpdated filtering of _revincludes.
* Remove all_constraints references which break in oracle 19c * Add changelog --------- Co-authored-by: juan.marchionatto <[email protected]>
* add check for empty fhirid string and add test * add test for populateid * changelog * version bump * version bump * reverse version bump * Back to 6.5.21-SNAPSHOT. --------- Co-authored-by: justindar <[email protected]> Co-authored-by: Luke deGruchy <[email protected]>
Use hash_identity for canonical join
          Codecov ReportPatch coverage has no change and project coverage change:  
 
 Additional details and impacted files@@             Coverage Diff              @@
##             master    #4924      +/-   ##
============================================
+ Coverage     81.32%   83.14%   +1.82%     
- Complexity    23650    25432    +1782     
============================================
  Files          1425     1549     +124     
  Lines         86399    92756    +6357     
  Branches      11677    12361     +684     
============================================
+ Hits          70265    77125    +6860     
+ Misses        10947    10194     -753     
- Partials       5187     5437     +250     ☔ View full report in Codecov by Sentry.  | 
    
              
                    fil512
  
              
              approved these changes
              
                  
                    May 20, 2023 
                  
              
              
            
            
              
                    fil512
  
              
              approved these changes
              
                  
                    May 20, 2023 
                  
              
              
            
            
  
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