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Add function to compare model results with measurements #258

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merged 8 commits into from
Oct 10, 2023
Merged

Add function to compare model results with measurements #258

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3010ddf
fix error in modpath
OnnoEbbens Aug 30, 2023
a001217
add caching function for dataframe, geodataframes and obscollections
OnnoEbbens Aug 30, 2023
3ca3fdf
add functions to compare bro measurements with model data, #51
OnnoEbbens Aug 30, 2023
aaa5dba
add example for bro methods
OnnoEbbens Aug 30, 2023
df32e9b
Merge remote-tracking branch 'origin/dev' into 51-toevoegen-functiona…
dbrakenhoff Sep 4, 2023
46c9c25
codacy
dbrakenhoff Sep 4, 2023
f883854
fixes for comments Davíd and update to hydropandas 0.9.1
OnnoEbbens Oct 10, 2023
8156af8
Merge branch 'dev' into 51-toevoegen-functionaliteit-voor-vergelijkin…
OnnoEbbens Oct 10, 2023
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105 changes: 32 additions & 73 deletions docs/examples/09_schoonhoven.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,7 @@
"import geopandas as gpd\n",
"from nlmod.plot import DatasetCrossSection\n",
"from shapely.geometry import LineString, Point\n",
"import warnings\n"
"import warnings"
]
},
{
Expand All @@ -41,7 +41,7 @@
"source": [
"print(f\"nlmod version: {nlmod.__version__}\")\n",
"\n",
"nlmod.util.get_color_logger(\"INFO\")"
"nlmod.util.get_color_logger(\"INFO\")\n"
]
},
{
Expand All @@ -64,7 +64,7 @@
"model_ws = \"schoonhoven\"\n",
"figdir, cachedir = nlmod.util.get_model_dirs(model_ws)\n",
"extent = [116_500, 120_000, 439_000, 442_000]\n",
"time = pd.date_range(\"2020\", \"2023\", freq=\"MS\") # monthly timestep\n"
"time = pd.date_range(\"2020\", \"2023\", freq=\"MS\") # monthly timestep"
]
},
{
Expand Down Expand Up @@ -98,7 +98,7 @@
" f\"{fname_bgt} not found. Please run notebook 02_surface_water.ipynb first\"\n",
" )\n",
" )\n",
"bgt = gpd.read_file(fname_bgt)\n"
"bgt = gpd.read_file(fname_bgt)"
]
},
{
Expand All @@ -121,7 +121,7 @@
"norm = matplotlib.colors.Normalize(vmin=-3, vmax=1)\n",
"cmap = \"viridis\"\n",
"bgt.plot(\"summer_stage\", ax=ax, norm=norm, cmap=cmap)\n",
"nlmod.plot.colorbar_inside(norm=norm, cmap=cmap);"
"nlmod.plot.colorbar_inside(norm=norm, cmap=cmap)"
]
},
{
Expand All @@ -141,7 +141,7 @@
"source": [
"f, ax = nlmod.plot.get_map(extent)\n",
"bgt.plot(\"ahn_min\", ax=ax, norm=norm, cmap=cmap)\n",
"nlmod.plot.colorbar_inside(norm=norm, cmap=cmap);"
"nlmod.plot.colorbar_inside(norm=norm, cmap=cmap)"
]
},
{
Expand All @@ -167,7 +167,7 @@
" cachedir=cachedir,\n",
" cachename=\"layer_model.nc\",\n",
")\n",
"layer_model\n"
"layer_model"
]
},
{
Expand All @@ -186,7 +186,7 @@
"outputs": [],
"source": [
"ds = nlmod.to_model_ds(layer_model, model_name, model_ws, delr=100.0, delc=100.0)\n",
"ds\n"
"ds"
]
},
{
Expand All @@ -208,7 +208,7 @@
"outputs": [],
"source": [
"refinement_features = [(bgt[bgt[\"bronhouder\"] == \"L0002\"], 2)]\n",
"ds = nlmod.grid.refine(ds, refinement_features=refinement_features)\n"
"ds = nlmod.grid.refine(ds, refinement_features=refinement_features)"
]
},
{
Expand Down Expand Up @@ -245,7 +245,7 @@
"outputs": [],
"source": [
"knmi_ds = nlmod.read.knmi.get_recharge(ds, cachedir=cachedir, cachename=\"recharge.nc\")\n",
"ds.update(knmi_ds)\n"
"ds.update(knmi_ds)"
]
},
{
Expand Down Expand Up @@ -289,7 +289,7 @@
"oc = nlmod.gwf.oc(ds, gwf)\n",
"\n",
"# create storagee package\n",
"sto = nlmod.gwf.sto(ds, gwf)\n"
"sto = nlmod.gwf.sto(ds, gwf)"
]
},
{
Expand Down Expand Up @@ -341,7 +341,7 @@
"lakes[\"name\"] = \"\"\n",
"lakes.loc[lakes[\"identificatie\"].isin(ids_grote_gracht), \"name\"] = \"grote gracht\"\n",
"lakes.loc[lakes[\"identificatie\"].isin(ids_oude_haven), \"name\"] = \"oude haven\"\n",
"bgt_grid = bgt_grid[~mask]\n"
"bgt_grid = bgt_grid[~mask]"
]
},
{
Expand All @@ -363,7 +363,7 @@
"lek[\"stage\"] = 0.0\n",
"lek[\"rbot\"] = -3.0\n",
"spd = nlmod.gwf.surface_water.build_spd(lek, \"RIV\", ds)\n",
"riv = flopy.mf6.ModflowGwfriv(gwf, stress_period_data={0: spd})\n"
"riv = flopy.mf6.ModflowGwfriv(gwf, stress_period_data={0: spd})"
]
},
{
Expand All @@ -382,7 +382,7 @@
"metadata": {},
"outputs": [],
"source": [
"drn = nlmod.gwf.surface_water.gdf_to_seasonal_pkg(bgt_grid, gwf, ds)"
"drn = nlmod.gwf.surface_water.gdf_to_seasonal_pkg(bgt_grid, gwf, ds)\n"
]
},
{
Expand Down Expand Up @@ -426,7 +426,7 @@
"] = 1.0 # overstort hoogte\n",
"\n",
"# add lake to groundwaterflow model\n",
"nlmod.gwf.lake_from_gdf(gwf, lakes, ds, boundname_column=\"name\")"
"nlmod.gwf.lake_from_gdf(gwf, lakes, ds, boundname_column=\"name\")\n"
]
},
{
Expand All @@ -437,7 +437,7 @@
"outputs": [],
"source": [
"# create recharge package\n",
"rch = nlmod.gwf.rch(ds, gwf)\n"
"rch = nlmod.gwf.rch(ds, gwf)"
]
},
{
Expand All @@ -455,7 +455,7 @@
"metadata": {},
"outputs": [],
"source": [
"nlmod.sim.write_and_run(sim, ds)\n"
"nlmod.sim.write_and_run(sim, ds)"
]
},
{
Expand All @@ -474,7 +474,7 @@
"metadata": {},
"outputs": [],
"source": [
"head = nlmod.gwf.get_heads_da(ds)\n"
"head = nlmod.gwf.get_heads_da(ds)"
]
},
{
Expand Down Expand Up @@ -532,7 +532,7 @@
"cbar = nlmod.plot.colorbar_inside(pc)\n",
"dcs.plot_grid()\n",
"dcs.plot_layers(colors=\"none\", min_label_area=1000)\n",
"f.tight_layout(pad=0.0)"
"f.tight_layout(pad=0.0)\n"
]
},
{
Expand All @@ -555,7 +555,7 @@
"head_point = nlmod.gwf.get_head_at_point(head, x=x, y=y, ds=ds)\n",
"fig, ax = plt.subplots(1, 1, figsize=(10, 8))\n",
"handles = head_point.plot.line(ax=ax, hue=\"layer\")\n",
"ax.set_ylabel(\"head [m NAP]\");"
"ax.set_ylabel(\"head [m NAP]\")"
]
},
{
Expand All @@ -575,17 +575,17 @@
"source": [
"df = pd.read_csv(os.path.join(model_ws, \"lak_STAGE.csv\"), index_col=0)\n",
"df.index = ds.time.values\n",
"ax = df.plot(figsize=(10, 3))"
"ax = df.plot(figsize=(10, 3))\n"
]
},
{
"cell_type": "raw",
"cell_type": "markdown",
"id": "9355de12",
"metadata": {
"raw_mimetype": "text/x-python"
},
"source": [
"### Compare with BRO measurements"
"## Compare with BRO measurements"
]
},
{
Expand All @@ -595,35 +595,8 @@
"raw_mimetype": "text/x-python"
},
"source": [
"fname_pklz = os.path.join(ds.cachedir, 'oc_bro.pklz')\n",
"if os.path.exists(fname_pklz):\n",
" oc = pd.read_pickle(fname_pklz)\n",
"else:\n",
" oc = hpd.read_bro(extent=ds.extent, name='BRO', tmin=ds.time.values.min(), tmax=ds.time.values.max(), )\n",
" oc.to_pickle(fname_pklz)"
]
},
{
"cell_type": "raw",
"id": "06fdd4cc-a15e-485e-b12e-fda9a464d30c",
"metadata": {
"raw_mimetype": "text/x-python"
},
"source": [
"# get modellayers\n",
"oc['modellayer'] = oc.gwobs.get_modellayers(ds=ds)"
]
},
{
"cell_type": "raw",
"id": "7831eddc-3b69-4cc5-b1c0-7ee09732a2f9",
"metadata": {
"raw_mimetype": "text/x-python"
},
"source": [
"# get modelled head at measurement points\n",
"ds['heads'] = nlmod.gwf.get_heads_da(ds)\n",
"oc_modflow = hpd.read_modflow(oc, gwf, ds['heads'].values, ds.time.values)"
"oc = nlmod.read.bro.get_bro(extent, cachedir=cachedir, cachename=\"bro\")\n",
"oc_mod = nlmod.read.bro.add_modelled_head(oc, gwf, ds=ds)"
]
},
{
Expand All @@ -633,22 +606,8 @@
"raw_mimetype": "text/x-python"
},
"source": [
"# add modelled head to measured heads\n",
"obs_list_map = []\n",
"for gld in oc.index:\n",
" o = oc.loc[gld,'obs'].resample('D').last().sort_index()\n",
" modelled = oc_modflow.loc[gld, 'obs']\n",
" modelled = hpd.GroundwaterObs(modelled.rename(columns={0: 'values'}), name=f'{o.name}_mod_lay{oc.loc[gld,\"modellayer\"]}', x=o.x, y=o.y, \n",
" tube_nr=o.tube_nr+1,screen_top=o.screen_top, screen_bottom=o.screen_bottom, \n",
" tube_top=o.tube_top, monitoring_well=o.monitoring_well, source='MODFLOW', unit= 'm NAP',\n",
" ground_level=o.ground_level, metadata_available=o.metadata_available)\n",
" obs_list_map.append(o)\n",
" obs_list_map.append(modelled)\n",
"\n",
"oc_map = hpd.ObsCollection.from_list(obs_list_map, name='meting+model')\n",
"\n",
"# create interactive map\n",
"oc_map.plots.interactive_map(os.path.join(ds.figdir, 'iplots'))"
"oc_mod.plots.interactive_map(\"figures\", add_screen_to_legend=True)"
]
},
{
Expand Down Expand Up @@ -689,7 +648,7 @@
" ha=\"center\",\n",
" va=\"top\",\n",
" transform=ax.transAxes,\n",
" )\n"
" )"
]
},
{
Expand Down Expand Up @@ -722,7 +681,7 @@
"pg = nlmod.modpath.pg_from_pd(nodes, localx=0.5, localy=0.5, localz=0.5)\n",
"\n",
"# create the modpath simulation file\n",
"mpsim = nlmod.modpath.sim(mpf, pg, \"forward\", gwf=gwf)\n"
"mpsim = nlmod.modpath.sim(mpf, pg, \"forward\", gwf=gwf)"
]
},
{
Expand All @@ -733,7 +692,7 @@
"outputs": [],
"source": [
"# run modpath model\n",
"nlmod.modpath.write_and_run(mpf, script_path=\"10_modpath.ipynb\")"
"nlmod.modpath.write_and_run(mpf, script_path=\"10_modpath.ipynb\")\n"
]
},
{
Expand All @@ -743,7 +702,7 @@
"metadata": {},
"outputs": [],
"source": [
"pdata = nlmod.modpath.load_pathline_data(mpf)\n"
"pdata = nlmod.modpath.load_pathline_data(mpf)"
]
},
{
Expand Down Expand Up @@ -786,7 +745,7 @@
"line = ax.add_collection(lc)\n",
"nlmod.plot.colorbar_inside(line, label=\"Travel time (years)\")\n",
"\n",
"bgt.plot(ax=ax, edgecolor=\"k\", facecolor=\"none\")"
"bgt.plot(ax=ax, edgecolor=\"k\", facecolor=\"none\")\n"
]
},
{
Expand Down Expand Up @@ -822,7 +781,7 @@
"dcs.plot_grid()\n",
"# add labels with layer names\n",
"dcs.plot_layers(alpha=0.0, min_label_area=1000)\n",
"f.tight_layout(pad=0.0)\n"
"f.tight_layout(pad=0.0)"
]
}
],
Expand Down
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