Features
- GUNC will now report the number of failed genomes if some fail when running in batch mode.
Bugfixes
- Fixed cases where number of mapped genes might be different when running smaller genomes individually vs grouped.
- Fixed cases where gunc would fail if - was in a sequence identifier.
- Fixed cases where contig colour in visualisation was incorrect.
- Fixed incorrect ordering of taxonomic levels in plot if user supplies them in an incorrect order.
- Allow GUNC to continue if some genomes fail diamond mapping.
- Fixed crash if diamond fails to map anything to GUNC reference.
- Fixed bug where GUNC goes into infinite loop if an input filename is merged.fa
Other
- class and order are now included in contig assignment output file (@aaronmussig)
- Fix pandas deprecation waring (@tmaklin)
- Added fixes for pandas FutureWarning (changing behaviour of Series.idxmax)
Contributors
tmaklin and aaronmussig