fix: Deflake alloydb omni by ankel · Pull Request #2431 · googleapis/mcp-toolbox

ankel · 2026-02-06T22:28:54Z

Description

Improve logic to check that database is up.

IMPORTANT DO NOT MERGE until I have reverted f7d7d9e

PR Checklist

Make sure you reviewed
CONTRIBUTING.md
Cloud Build Failure Reporter: toolbox-test-on-merge (toolbox-testing-438616) failed #2422
Ensure the tests and linter pass
Code coverage does not decrease (if any source code was changed)
Appropriate docs were updated (if necessary)
Make sure to add ! if this involve a breaking change

🛠️ Fixes #2422

gemini-code-assist · 2026-02-06T22:29:11Z

Summary of Changes

Hello @ankel, I'm Gemini Code Assist¹! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request aims to significantly improve the reliability and stability of the AlloyDB Omni integration tests. It addresses flakiness by implementing a retry mechanism in the CI pipeline and, more importantly, by refining the logic used to determine when the database container is fully up and ready to accept connections. These changes collectively reduce the chances of transient test failures.

Highlights

CI Test Retries: Implemented a retry mechanism for AlloyDB Omni integration tests in the CI pipeline, allowing them to run up to 10 times to mitigate transient failures and improve test stability.
Database Readiness Check Improvement: Enhanced the database startup readiness check for AlloyDB Omni integration tests by using more reliable log messages ('database system was shut down at' and 'database system is ready to accept connections') instead of a less consistent 'Post Startup' message. This ensures the database is fully operational before tests proceed.
Code Refactoring: Extracted the PostgreSQL URL construction logic into a new helper function buildPostgresURL from initPostgresConnectionPool to improve code modularity and readability within the integration tests.

Changelog

.ci/integration.cloudbuild.yaml
- Added a for loop to retry AlloyDB Omni integration tests up to 10 times.
tests/alloydbomni/alloydb_omni_integration_test.go
- Refactored initPostgresConnectionPool to extract URL building into a new buildPostgresURL helper function.
- Updated setupAlloyDBContainer to use more robust log messages for database readiness checks (database system was shut down at, database system is ready to accept connections).

Activity

The author has reviewed the CONTRIBUTING.md document.
The pull request is linked to and fixes issue Cloud Build Failure Reporter: toolbox-test-on-merge (toolbox-testing-438616) failed #2422.
The author has checked off the item related to issue Cloud Build Failure Reporter: toolbox-test-on-merge (toolbox-testing-438616) failed #2422 in the PR checklist.

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Code Review

This pull request aims to fix flakiness in the AlloyDB Omni integration tests. The changes to alloydb_omni_integration_test.go are good, particularly the improved logic for checking database readiness in the test container. This should effectively address the root cause of the flakiness. However, the change in .ci/integration.cloudbuild.yaml to run the tests in a loop 10 times seems like a temporary workaround that will significantly increase CI execution time. I've recommended removing this loop, as the primary fix should make it redundant.

On first startup, alloydb omni restarts the database twice. This can resulted in incorrect start up signal. This commit for this restart to improve reliability when detecting database startup. Tested with 100 runs locally. #2422

## Description Improve logic to check that database is up. **IMPORTANT** DO NOT MERGE until I have reverted f7d7d9e ## PR Checklist - [x] Make sure you reviewed [CONTRIBUTING.md](https://github.com/googleapis/genai-toolbox/blob/main/CONTRIBUTING.md) - [x] #2422 - [ ] Ensure the tests and linter pass - [ ] Code coverage does not decrease (if any source code was changed) - [ ] Appropriate docs were updated (if necessary) - [ ] Make sure to add `!` if this involve a breaking change 🛠️ Fixes #2422 Co-authored-by: Averi Kitsch <akitsch@google.com>

## Description Improve logic to check that database is up. **IMPORTANT** DO NOT MERGE until I have reverted googleapis@f7d7d9e ## PR Checklist - [x] Make sure you reviewed [CONTRIBUTING.md](https://github.com/googleapis/genai-toolbox/blob/main/CONTRIBUTING.md) - [x] googleapis#2422 - [ ] Ensure the tests and linter pass - [ ] Code coverage does not decrease (if any source code was changed) - [ ] Appropriate docs were updated (if necessary) - [ ] Make sure to add `!` if this involve a breaking change 🛠️ Fixes googleapis#2422 Co-authored-by: Averi Kitsch <akitsch@google.com>

🤖 I have created a release *beep* *boop* --- ## [0.28.0](v0.27.0...v0.28.0) (2026-03-02) ### Features * Add polling system to dynamic reloading ([#2466](#2466)) ([fcaac9b](fcaac9b)) * Added basic template for sdks doc migrate ([#1961](#1961)) ([87f2eaf](87f2eaf)) * **dataproc:** Add dataproc source and list/get clusters/jobs tools ([#2407](#2407)) ([cc05e57](cc05e57)) * **sources/postgres:** Add configurable pgx query execution mode ([#2477](#2477)) ([57b77bc](57b77bc)) * **sources/redis:** Add TLS support for Redis connections ([#2432](#2432)) ([d6af290](d6af290)) * **tools/looker:** Enable Get All Lookml Tests, Run LookML Tests, and Create View From Table tools for Looker ([#2522](#2522)) ([e01139a](e01139a)) * **tools/looker:** Tools to list/create/delete directories ([#2488](#2488)) ([0036d8c](0036d8c)) * **ui:** Make tool list panel resizable ([#2253](#2253)) ([276cf60](276cf60)) ### Bug Fixes * **ci:** Add path for forked PR unit test runs ([#2540](#2540)) ([04dd2a7](04dd2a7)) * Deflake alloydb omni ([#2431](#2431)) ([62b8309](62b8309)) * **docs/adk:** Resolve dependency duplication ([#2418](#2418)) ([4d44abb](4d44abb)) * **docs/langchain:** Fix core at 0.3.0 and align compatible dependencies ([#2426](#2426)) ([36edfd3](36edfd3)) * Enforce required validation for explicit null parameter values ([#2519](#2519)) ([d5e9512](d5e9512)) * **oracle:** Enable DML operations and resolve incorrect array type error ([#2323](#2323)) ([72146a4](72146a4)) * **server/mcp:** Guard nil dereference in sseManager.get ([#2557](#2557)) ([e534196](e534196)), closes [#2548](#2548) * **tests/postgres:** Implement uuid-based isolation and reliable resource cleanup ([#2377](#2377)) ([8a96fb1](8a96fb1)) * **tests/postgres:** Restore list_schemas test and implement dynamic owner ([#2521](#2521)) ([7041e79](7041e79)) * **tests:** Resolve LlamaIndex dependency conflict in JS quickstart ([#2597](#2597)) ([ac11f5a](ac11f5a)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: release-please[bot] <55107282+release-please[bot]@users.noreply.github.com> Co-authored-by: Wenxin Du <117315983+duwenxin99@users.noreply.github.com>

🤖 I have created a release *beep* *boop* --- ## [0.28.0](v0.27.0...v0.28.0) (2026-03-02) ### Features * Add polling system to dynamic reloading ([#2466](#2466)) ([fcaac9b](fcaac9b)) * Added basic template for sdks doc migrate ([#1961](#1961)) ([87f2eaf](87f2eaf)) * **dataproc:** Add dataproc source and list/get clusters/jobs tools ([#2407](#2407)) ([cc05e57](cc05e57)) * **sources/postgres:** Add configurable pgx query execution mode ([#2477](#2477)) ([57b77bc](57b77bc)) * **sources/redis:** Add TLS support for Redis connections ([#2432](#2432)) ([d6af290](d6af290)) * **tools/looker:** Enable Get All Lookml Tests, Run LookML Tests, and Create View From Table tools for Looker ([#2522](#2522)) ([e01139a](e01139a)) * **tools/looker:** Tools to list/create/delete directories ([#2488](#2488)) ([0036d8c](0036d8c)) * **ui:** Make tool list panel resizable ([#2253](#2253)) ([276cf60](276cf60)) ### Bug Fixes * **ci:** Add path for forked PR unit test runs ([#2540](#2540)) ([04dd2a7](04dd2a7)) * Deflake alloydb omni ([#2431](#2431)) ([62b8309](62b8309)) * **docs/adk:** Resolve dependency duplication ([#2418](#2418)) ([4d44abb](4d44abb)) * **docs/langchain:** Fix core at 0.3.0 and align compatible dependencies ([#2426](#2426)) ([36edfd3](36edfd3)) * Enforce required validation for explicit null parameter values ([#2519](#2519)) ([d5e9512](d5e9512)) * **oracle:** Enable DML operations and resolve incorrect array type error ([#2323](#2323)) ([72146a4](72146a4)) * **server/mcp:** Guard nil dereference in sseManager.get ([#2557](#2557)) ([e534196](e534196)), closes [#2548](#2548) * **tests/postgres:** Implement uuid-based isolation and reliable resource cleanup ([#2377](#2377)) ([8a96fb1](8a96fb1)) * **tests/postgres:** Restore list_schemas test and implement dynamic owner ([#2521](#2521)) ([7041e79](7041e79)) * **tests:** Resolve LlamaIndex dependency conflict in JS quickstart ([#2597](#2597)) ([ac11f5a](ac11f5a)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: release-please[bot] <55107282+release-please[bot]@users.noreply.github.com> Co-authored-by: Wenxin Du <117315983+duwenxin99@users.noreply.github.com> 81253a0

🤖 I have created a release *beep* *boop* --- ## [0.28.0](googleapis/mcp-toolbox@v0.27.0...v0.28.0) (2026-03-02) ### Features * Add polling system to dynamic reloading ([googleapis#2466](googleapis#2466)) ([fcaac9b](googleapis@fcaac9b)) * Added basic template for sdks doc migrate ([googleapis#1961](googleapis#1961)) ([87f2eaf](googleapis@87f2eaf)) * **dataproc:** Add dataproc source and list/get clusters/jobs tools ([googleapis#2407](googleapis#2407)) ([cc05e57](googleapis@cc05e57)) * **sources/postgres:** Add configurable pgx query execution mode ([googleapis#2477](googleapis#2477)) ([57b77bc](googleapis@57b77bc)) * **sources/redis:** Add TLS support for Redis connections ([googleapis#2432](googleapis#2432)) ([d6af290](googleapis@d6af290)) * **tools/looker:** Enable Get All Lookml Tests, Run LookML Tests, and Create View From Table tools for Looker ([googleapis#2522](googleapis#2522)) ([e01139a](googleapis@e01139a)) * **tools/looker:** Tools to list/create/delete directories ([googleapis#2488](googleapis#2488)) ([0036d8c](googleapis@0036d8c)) * **ui:** Make tool list panel resizable ([googleapis#2253](googleapis#2253)) ([276cf60](googleapis@276cf60)) ### Bug Fixes * **ci:** Add path for forked PR unit test runs ([googleapis#2540](googleapis#2540)) ([04dd2a7](googleapis@04dd2a7)) * Deflake alloydb omni ([googleapis#2431](googleapis#2431)) ([62b8309](googleapis@62b8309)) * **docs/adk:** Resolve dependency duplication ([googleapis#2418](googleapis#2418)) ([4d44abb](googleapis@4d44abb)) * **docs/langchain:** Fix core at 0.3.0 and align compatible dependencies ([googleapis#2426](googleapis#2426)) ([36edfd3](googleapis@36edfd3)) * Enforce required validation for explicit null parameter values ([googleapis#2519](googleapis#2519)) ([d5e9512](googleapis@d5e9512)) * **oracle:** Enable DML operations and resolve incorrect array type error ([googleapis#2323](googleapis#2323)) ([72146a4](googleapis@72146a4)) * **server/mcp:** Guard nil dereference in sseManager.get ([googleapis#2557](googleapis#2557)) ([e534196](googleapis@e534196)), closes [googleapis#2548](googleapis#2548) * **tests/postgres:** Implement uuid-based isolation and reliable resource cleanup ([googleapis#2377](googleapis#2377)) ([8a96fb1](googleapis@8a96fb1)) * **tests/postgres:** Restore list_schemas test and implement dynamic owner ([googleapis#2521](googleapis#2521)) ([7041e79](googleapis@7041e79)) * **tests:** Resolve LlamaIndex dependency conflict in JS quickstart ([googleapis#2597](googleapis#2597)) ([ac11f5a](googleapis@ac11f5a)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: release-please[bot] <55107282+release-please[bot]@users.noreply.github.com> Co-authored-by: Wenxin Du <117315983+duwenxin99@users.noreply.github.com> 81253a0

🤖 I have created a release *beep* *boop* --- ## [0.28.0](googleapis/mcp-toolbox@v0.27.0...v0.28.0) (2026-03-02) ### Features * Add polling system to dynamic reloading ([#2466](googleapis/mcp-toolbox#2466)) ([fcaac9b](googleapis/mcp-toolbox@fcaac9b)) * Added basic template for sdks doc migrate ([#1961](googleapis/mcp-toolbox#1961)) ([87f2eaf](googleapis/mcp-toolbox@87f2eaf)) * **dataproc:** Add dataproc source and list/get clusters/jobs tools ([#2407](googleapis/mcp-toolbox#2407)) ([cc05e57](googleapis/mcp-toolbox@cc05e57)) * **sources/postgres:** Add configurable pgx query execution mode ([#2477](googleapis/mcp-toolbox#2477)) ([57b77bc](googleapis/mcp-toolbox@57b77bc)) * **sources/redis:** Add TLS support for Redis connections ([#2432](googleapis/mcp-toolbox#2432)) ([d6af290](googleapis/mcp-toolbox@d6af290)) * **tools/looker:** Enable Get All Lookml Tests, Run LookML Tests, and Create View From Table tools for Looker ([#2522](googleapis/mcp-toolbox#2522)) ([e01139a](googleapis/mcp-toolbox@e01139a)) * **tools/looker:** Tools to list/create/delete directories ([#2488](googleapis/mcp-toolbox#2488)) ([0036d8c](googleapis/mcp-toolbox@0036d8c)) * **ui:** Make tool list panel resizable ([#2253](googleapis/mcp-toolbox#2253)) ([276cf60](googleapis/mcp-toolbox@276cf60)) ### Bug Fixes * **ci:** Add path for forked PR unit test runs ([#2540](googleapis/mcp-toolbox#2540)) ([04dd2a7](googleapis/mcp-toolbox@04dd2a7)) * Deflake alloydb omni ([#2431](googleapis/mcp-toolbox#2431)) ([62b8309](googleapis/mcp-toolbox@62b8309)) * **docs/adk:** Resolve dependency duplication ([#2418](googleapis/mcp-toolbox#2418)) ([4d44abb](googleapis/mcp-toolbox@4d44abb)) * **docs/langchain:** Fix core at 0.3.0 and align compatible dependencies ([#2426](googleapis/mcp-toolbox#2426)) ([36edfd3](googleapis/mcp-toolbox@36edfd3)) * Enforce required validation for explicit null parameter values ([#2519](googleapis/mcp-toolbox#2519)) ([d5e9512](googleapis/mcp-toolbox@d5e9512)) * **oracle:** Enable DML operations and resolve incorrect array type error ([#2323](googleapis/mcp-toolbox#2323)) ([72146a4](googleapis/mcp-toolbox@72146a4)) * **server/mcp:** Guard nil dereference in sseManager.get ([#2557](googleapis/mcp-toolbox#2557)) ([e534196](googleapis/mcp-toolbox@e534196)), closes [#2548](googleapis/mcp-toolbox#2548) * **tests/postgres:** Implement uuid-based isolation and reliable resource cleanup ([#2377](googleapis/mcp-toolbox#2377)) ([8a96fb1](googleapis/mcp-toolbox@8a96fb1)) * **tests/postgres:** Restore list_schemas test and implement dynamic owner ([#2521](googleapis/mcp-toolbox#2521)) ([7041e79](googleapis/mcp-toolbox@7041e79)) * **tests:** Resolve LlamaIndex dependency conflict in JS quickstart ([#2597](googleapis/mcp-toolbox#2597)) ([ac11f5a](googleapis/mcp-toolbox@ac11f5a)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: release-please[bot] <55107282+release-please[bot]@users.noreply.github.com> Co-authored-by: Wenxin Du <117315983+duwenxin99@users.noreply.github.com>

🤖 I have created a release *beep* *boop* --- ## [0.28.0](googleapis/mcp-toolbox@v0.27.0...v0.28.0) (2026-03-02) ### Features * Add polling system to dynamic reloading ([googleapis#2466](googleapis#2466)) ([fcaac9b](googleapis@fcaac9b)) * Added basic template for sdks doc migrate ([googleapis#1961](googleapis#1961)) ([87f2eaf](googleapis@87f2eaf)) * **dataproc:** Add dataproc source and list/get clusters/jobs tools ([googleapis#2407](googleapis#2407)) ([cc05e57](googleapis@cc05e57)) * **sources/postgres:** Add configurable pgx query execution mode ([googleapis#2477](googleapis#2477)) ([57b77bc](googleapis@57b77bc)) * **sources/redis:** Add TLS support for Redis connections ([googleapis#2432](googleapis#2432)) ([d6af290](googleapis@d6af290)) * **tools/looker:** Enable Get All Lookml Tests, Run LookML Tests, and Create View From Table tools for Looker ([googleapis#2522](googleapis#2522)) ([e01139a](googleapis@e01139a)) * **tools/looker:** Tools to list/create/delete directories ([googleapis#2488](googleapis#2488)) ([0036d8c](googleapis@0036d8c)) * **ui:** Make tool list panel resizable ([googleapis#2253](googleapis#2253)) ([276cf60](googleapis@276cf60)) ### Bug Fixes * **ci:** Add path for forked PR unit test runs ([googleapis#2540](googleapis#2540)) ([04dd2a7](googleapis@04dd2a7)) * Deflake alloydb omni ([googleapis#2431](googleapis#2431)) ([62b8309](googleapis@62b8309)) * **docs/adk:** Resolve dependency duplication ([googleapis#2418](googleapis#2418)) ([4d44abb](googleapis@4d44abb)) * **docs/langchain:** Fix core at 0.3.0 and align compatible dependencies ([googleapis#2426](googleapis#2426)) ([36edfd3](googleapis@36edfd3)) * Enforce required validation for explicit null parameter values ([googleapis#2519](googleapis#2519)) ([d5e9512](googleapis@d5e9512)) * **oracle:** Enable DML operations and resolve incorrect array type error ([googleapis#2323](googleapis#2323)) ([72146a4](googleapis@72146a4)) * **server/mcp:** Guard nil dereference in sseManager.get ([googleapis#2557](googleapis#2557)) ([e534196](googleapis@e534196)), closes [googleapis#2548](googleapis#2548) * **tests/postgres:** Implement uuid-based isolation and reliable resource cleanup ([googleapis#2377](googleapis#2377)) ([8a96fb1](googleapis@8a96fb1)) * **tests/postgres:** Restore list_schemas test and implement dynamic owner ([googleapis#2521](googleapis#2521)) ([7041e79](googleapis@7041e79)) * **tests:** Resolve LlamaIndex dependency conflict in JS quickstart ([googleapis#2597](googleapis#2597)) ([ac11f5a](googleapis@ac11f5a)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: release-please[bot] <55107282+release-please[bot]@users.noreply.github.com> Co-authored-by: Wenxin Du <117315983+duwenxin99@users.noreply.github.com>

gemini-code-assist bot reviewed Feb 6, 2026

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Comment thread .ci/integration.cloudbuild.yaml Outdated

ankel changed the title ~~Deflake alloydb omni~~ fix: Deflake alloydb omni Feb 6, 2026

ankel force-pushed the deflake-alloydb-omni branch 4 times, most recently from d73dbb5 to 66c951a Compare February 10, 2026 17:50

fix(alloydbomni): Add more check for database readiness

518dfff

On first startup, alloydb omni restarts the database twice. This can resulted in incorrect start up signal. This commit for this restart to improve reliability when detecting database startup. Tested with 100 runs locally. #2422

ankel force-pushed the deflake-alloydb-omni branch 2 times, most recently from 1964b4f to f7d7d9e Compare February 10, 2026 21:49

ankel requested a review from averikitsch February 11, 2026 02:09

ankel marked this pull request as ready for review February 11, 2026 02:09

ankel requested review from a team February 11, 2026 02:09

blunderbuss-gcf bot assigned duwenxin99 Feb 11, 2026

ankel mentioned this pull request Feb 11, 2026

Cloud Build Failure Reporter: toolbox-test-on-merge (toolbox-testing-438616) failed #2422

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ankel force-pushed the deflake-alloydb-omni branch from f7d7d9e to 518dfff Compare February 11, 2026 20:19

averikitsch approved these changes Feb 11, 2026

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Merge branch 'main' into deflake-alloydb-omni

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averikitsch enabled auto-merge (squash) February 13, 2026 17:30

averikitsch merged commit 62b8309 into main Feb 13, 2026
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averikitsch deleted the deflake-alloydb-omni branch February 13, 2026 17:55

release-please bot mentioned this pull request Feb 13, 2026

chore(main): release 0.28.0 #2472

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BrewTestBot mentioned this pull request Mar 3, 2026

mcp-toolbox 0.28.0 Homebrew/homebrew-core#270280

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fix: Deflake alloydb omni#2431

fix: Deflake alloydb omni#2431
averikitsch merged 2 commits intomainfrom
deflake-alloydb-omni

ankel commented Feb 6, 2026 •

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