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DeepVariant 0.10.0
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@pichuan pichuan released this 26 Mar 19:19
· 2 commits to r0.10 since this release
v0.10.0
4b937f0
  • Update to Python3 and TensorFlow2: We use Python3.6, and pin to TensorFlow 2.0.0.
  • Improved PacBio model for amplified libraries: the PacBio HiFi training data now includes amplified libraries at both standard and high coverages. This provides a substantial accuracy boost to variant detection from amplified HiFi data.
  • Turned off ws_use_window_selector_model by default: This flag was turned on by default in v0.7.0. After the discussion in issue #272, we decided to turn this off to improve consistency and accuracy, at the trade-off of a 7% increase in runtime of the make_examples step.
    Users may add --make_examples_extra_args "ws_use_window_selector_model=true" to save some runtime at the expense of accuracy.
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