Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add Singularity build recipe and run script. #182

Closed
wants to merge 7 commits into from
Closed

Add Singularity build recipe and run script. #182

wants to merge 7 commits into from

Conversation

prehensilecode
Copy link

Added a Singularity build recipe, and a run_singularity.py script similar to the existing run_docker.py script. The run_singularity.py script takes the same options/flags as run_docker.py

run_singularity.py was tested with both the following (Singularity 3.8.1 + Python 3.9.1 + absl-py 0.13.0 on RHEL 8.1 with Nvidia Tesla V100-SXM2):

    python3 ./singularity/run_singularity.py --fasta_paths=T1050.fasta --max_template_date=2020-05-14
    python3 ./singularity/run_singularity.py --fasta_paths=T1050.fasta --max_template_date=2020-05-14 --preset reduced_dbs

@google-cla google-cla bot added the cla: yes label Sep 21, 2021
@Augustin-Zidek
Copy link
Collaborator

Unfortunately we don't have the capacity to maintain and support Singularity. We added a link in the README to the two AlphaFold issues that have links to third party repositories with Singularity definition files (#10 and #24).

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants