Add benchmark script to create species changes tables for GEOS-Chem wiki #337
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gcpy/benchmark/modules/benchmark_species_changes.py - Added this script to compute a table of species that have changed between each version, along with corresponding metadata CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca <[email protected]>
gcpy/benchmark/modules/benchmark_species_changes.py - Add Pydoc headers - Add code to generate the wiki tables for "Species added" and "Species removed" - Print out the list of species with changed attributes (you then can use this info to manually create the table) - Now use argparse to handle input arguments Signed-off-by: Bob Yantosca <[email protected]>
gcpy/benchmark/modules/benchmark_species_changes.py - Renamed function "create_wiki_tables" to "make_benchmark_species_changes_wiki_tables" Signed-off-by: Bob Yantosca <[email protected]>
yantosca
added
category: Feature Request
lizziel
requested changes
Oct 3, 2024
gcpy/benchmark/modules/benchmark_species.py - Added a new line (\n) after the line with bgcolor, in order to have the table render properly. Signed-off-by: Bob Yantosca <[email protected]>
gcpy/benchmark/modules/benchmark_species_changes.py
- Add "\n" after cellpadding in the first table header line
- Add bgcolor tag for each header column
- Now use proper Heading 3 tag ("=== ===")
Signed-off-by: Bob Yantosca <[email protected]>
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Thanks @lizziel. Running this command: python -m gcpy.benchmark.modules.benchmark_species_changes \
--ref-label "14.5.0-alpha.5" \
--ref-log "14.5.0-alpha.5/runlog.txt" \
--dev-label "14.5.0-alpha.9" \
--dev-log "14.5.0-alpha.9/runlog.txt" \
--spcdb-dir "14.5.0-alpha.9" \
--output-file "wiki_tables.txt"gives this output Species with changes (also check advected species) ALK4N2 {'DryDepId': {'Ref': False, 'Dev': True}}
ALK4P {'DryDepId': {'Ref': False, 'Dev': True}}
PPN {'PhotolId': {'Ref': False, 'Dev': True}}
RCOOH {'DryDepId': {'Ref': False, 'Dev': True}, 'WetDepId': {'Ref': False, 'Dev': True}}and also writes these tables Which looks like this: and this We can skip posting a table to the wiki if it has no species added/removed. |
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Name and Institution (Required)
Name: Bob Yantosca
Institution: Harvard + GCST
Describe the update
This PR adds a script to print tables (in MediaWiki format) of GEOS-Chem species that were added or removed between two GEOS-Chem benchmark versions. It is called with e.g.:
We also have modified the "Added" entries in the
CHANGELOG.mdfile so that they start with the verb "Added".Expected changes
This PR is a zero-diff update w/r/t existing benchmark functionality. It adds a script that can be manually called to generate tables of species that have changed between benchmarks.