Update benchmark YAML files with new species for GEOS-Chem 14.5.0

[yantosca]

Name and Institution (Required)

Name: Bob Yantosca
Institution: Harvard + GCST

Describe the update

This PR updates the following benchmark configuration files with the latest species as of GEOS-Chem 14.5.0:

• gcpy/benchmark/modules/benchmark_categories.yml
• gcpy/benchmark/modules/emission_species.yml
• gcpy/benchmark/modules/lumped_species.yml

This will make sure to include new species into the proper benchmark categories, etc.

Expected changes

New species will be included in the proper PDF corresponding to its category. Also units will be properly specified in emissions tables.

Reference(s)

N/A

Related Github Issue

• See Chemistry for RCOOH, monoterpenes, new PNs and ANs from Travis et al. (2024) geos-chem#2318

Tagging @msulprizio @lizziel @ktravis213 @kelvinhb

[ktravis213]

Hi everyone! Could we add RCOOH and ACR to secondary organics? Could we add ALK6, C4H6, TMB, STYR, EBZ to primary organics? Could NOy include the following additions (in red?) Also @kelvinhb could we add ACR emissions to the emissions pull request?

[ktravis213]

May we also update RO2 to be the following?

[kelvinhb]

Katie's additions look good, I'd also add that:
• NPHEN should be added to the NOy category
• AROMRO2, BZCO3, BENZO2, ETOO and OTHRO2 should be added to the RO2 category
• BRO2, TRO2, XRO2 should be removed from the RO2 category -- they're now just dummy species for SOA calculations and don't do active RO2 chemistry
• If this is happening concurrently with (or after) Jared's updates to ALK4 chemistry [#2352], then there's a few more species to add to NOy (ALK4N1, ALK4N2) and to RO2 (ALK4N1, ALK4O2).

[yantosca]

@ktravis213, @kelvinhb: I've updated the benchmark_categories.yml and lumped_species.yml files according to your feedback in commit 9d2c054. Please let me know if these files look OK. I wasn't sure about some of the molar ratios in the lumped_species.yml but assumed 1.

[yantosca]

@ktravis213 @kelvinhb: I also added ACR, C4H6, MVK, STYR, TMB to emission_species.yml so that those would show up in the biomass burning plots.

[msulprizio]

Good to merge. Thanks @yantosca!