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Add cleaner titels
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ninamiolane committed May 24, 2024
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19 changes: 14 additions & 5 deletions tutorials/01_methods_create_synthetic_data.ipynb
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"cell_type": "markdown",
"metadata": {},
"source": [
"### Ring $\\mathcal{S}^1$ in Neural State Space $\\mathbb{R}^3$\n",
"## Ring $\\mathcal{S}^1$ in Neural State Space $\\mathbb{R}^3$\n",
"\n",
"We use $N=3$ encoding vectors to represent the recording of $N=3$ neurons.\n",
"\n",
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"cell_type": "markdown",
"metadata": {},
"source": [
"### Cylinder ($\\mathcal{S}^1 \\times [0,1]$) in Neural State Space $\\mathbb{R}^3$"
"## Cylinder ($\\mathcal{S}^1 \\times [0,1]$) in Neural State Space $\\mathbb{R}^3$"
]
},
{
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"cell_type": "markdown",
"metadata": {},
"source": [
"### Flat torus $\\mathcal{T}^2$ in Neural State Space $\\mathbb{R}^3$"
"## Flat torus $\\mathcal{T}^2$ in Neural State Space $\\mathbb{R}^3$"
]
},
{
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"cell_type": "markdown",
"metadata": {},
"source": [
"## Extrinsic dimension of curved low-dim manifold"
"## Estimate Extrinsic Dimension of Neural Manifold"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Here, we use `skdim` to estimate the extrinsic dimension of a ring (circle) manifold embedded in neural state space $\\mathbb{R}^N$ where the number of neurons $N$ can vary.\n",
"\n",
"We observe whether the estimated extrinsic dimension varies with $N$."
]
},
{
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"cell_type": "markdown",
"metadata": {},
"source": [
"## Synthetic neural activity encoding Van der Pol Oscillator"
"## Synthetic Neural Activity Encoding: Van der Pol Oscillator"
]
},
{
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