Test

Try install cmake and boost with pip in test.yml #83

	name: Test

	on:
	push:
	branches: [main,github-actions-test]
	paths-ignore:
	- 'docs/**'
	- 'README.md'
	- 'LICENSE.txt'
	- '.gitignore'

	pull_request:
	branches: [main]
	paths-ignore:
	- 'docs/**'
	- 'README.md'
	- 'LICENSE.txt'
	- '.gitignore'


	jobs:

	build:
	runs-on: ${{ matrix.os }}

	strategy:
	fail-fast: false
	matrix:
	os: [ubuntu-latest]
	python-version: ["3.11.3"]
	flavor: ["all"]

	steps:
	- uses: actions/checkout@v3

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	cache: "pip"
	cache-dependency-path: "pyproject.toml"

	- name: Install Package [${{ matrix.flavor }}]
	run: \|
	pip install cmake boost
	pip install -e .[${{ matrix.flavor }}]

	- name: Typecheck [mypy]
	run: \|
	mypy -p neurometry
	continue-on-error: true

	- name: Run tests [pytest]
	run: \|
	pytest --cov --cov-report=xml:coverage.xml

	- name: Upload coverage reports to Codecov
	uses: codecov/[email protected]
	with:
	token: ${{ secrets.CODECOV_TOKEN }}
	slug: geometric-intelligence/neurometry
	file: coverage.xml
	fail_ci_if_error: false

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