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Merge branch 'baagaard/feature-install-deps'
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* baagaard/feature-install-deps:
  Add ability to install dependencies to separate directory. Add --with-debugging option.
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@baagaard-usgs
baagaard-usgs committed Jun 28, 2018
2 parents 4253273 + 9722dd4 commit 11c3786
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Showing 2 changed files with 83 additions and 53 deletions.
94 changes: 52 additions & 42 deletions Makefile.am
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Original file line number Diff line number Diff line change
Expand Up @@ -175,7 +175,14 @@ FETCH_SCRIPT = $(top_srcdir)/bin/fetch.sh
# ----------------------------------------------------------------------
# Environment settings.
# ----------------------------------------------------------------------
env_flags = CPPFLAGS="$(CPPFLAGS)" LDFLAGS="$(LDFLAGS)" CFLAGS="$(CFLAGS)" CXXFLAGS="$(CXXFLAGS) -DMPICH_IGNORE_CXX_SEEK" FCFLAGS="$(FCFLAGS)"

env_flags_deps = CPPFLAGS="$(CPPFLAGS)" LDFLAGS="$(LDFLAGS)" CFLAGS="$(CFLAGS)" CXXFLAGS="$(CXXFLAGS) -DMPICH_IGNORE_CXX_SEEK" FCFLAGS="$(FCFLAGS)"

if WITH_DEBUGGING
env_flags_cig = CPPFLAGS="$(CPPFLAGS)" LDFLAGS="$(LDFLAGS)" CFLAGS="$(CFLAGS) -g -O" CXXFLAGS="$(CXXFLAGS) -DMPICH_IGNORE_CXX_SEEK -g -O" FCFLAGS="$(FCFLAGS) -g -O"
else
env_flags_cig = CPPFLAGS="$(CPPFLAGS)" LDFLAGS="$(LDFLAGS)" CFLAGS="$(CFLAGS)" CXXFLAGS="$(CXXFLAGS) -DMPICH_IGNORE_CXX_SEEK" FCFLAGS="$(FCFLAGS)"
endif

if WITH_FORTRAN
env_compilers = CC=$(CC) CXX=$(CXX) FC=$(FC)
Expand Down Expand Up @@ -211,6 +218,7 @@ rebuild-all: finished_mkdest compilers python mpi cppunit swig numpy proj4 netcd
# setup
# ----------------------------------------------------------------------
mkdest:
$(MKDIR_P) $(prefix_deps)/include $(prefix_deps)/lib $(prefix_deps)/bin $(prefix_deps)/$(PYTHON_SITEPKGS)
$(MKDIR_P) $(prefix)/include $(prefix)/lib $(prefix)/bin $(prefix)/$(PYTHON_SITEPKGS)

finished_mkdest:
Expand All @@ -228,25 +236,25 @@ if INSTALL_AUTOTOOLS
$(TAR) -zxf m4-$(M4_VER).tar.gz
mkdir -p m4-$(M4_VER)-build
cd m4-$(M4_VER)-build && \
../m4-$(M4_VER)/configure --prefix=$(prefix) $(env_flags) && \
../m4-$(M4_VER)/configure --prefix=$(prefix_deps) $(env_flags_deps) && \
make -j $(MAKE_THREADS) && \
make install
$(TAR) -zxf autoconf-$(AUTOCONF_VER).tar.gz
mkdir -p autoconf-$(AUTOCONF_VER)-build
cd autoconf-$(AUTOCONF_VER)-build && \
../autoconf-$(AUTOCONF_VER)/configure --prefix=$(prefix) $(env_flags) && \
../autoconf-$(AUTOCONF_VER)/configure --prefix=$(prefix_deps) $(env_flags_deps) && \
make -j $(MAKE_THREADS) && \
make install
$(TAR) -zxf automake-$(AUTOMAKE_VER).tar.gz
mkdir -p automake-$(AUTOMAKE_VER)-build
cd automake-$(AUTOMAKE_VER)-build && \
../automake-$(AUTOMAKE_VER)/configure --prefix=$(prefix) $(env_flags) && \
../automake-$(AUTOMAKE_VER)/configure --prefix=$(prefix_deps) $(env_flags_deps) && \
make -j $(MAKE_THREADS) && \
make install
$(TAR) -zxf libtool-$(LIBTOOL_VER).tar.gz
mkdir -p libtool-$(LIBTOOL_VER)-build
cd libtool-$(LIBTOOL_VER)-build && \
../libtool-$(LIBTOOL_VER)/configure --prefix=$(prefix) $(env_flags) && \
../libtool-$(LIBTOOL_VER)/configure --prefix=$(prefix_deps) $(env_flags_deps) && \
make -j $(MAKE_THREADS) && \
make install && \
touch ../installed_autotools
Expand Down Expand Up @@ -277,11 +285,11 @@ if INSTALL_GCC
ln -sf mpfr-$(MPFR_VER)/ mpfr
$(MKDIR_P) gcc-build
cd gcc-build && \
../gcc-$(GCC_VER)/configure --prefix=$(prefix) \
../gcc-$(GCC_VER)/configure --prefix=$(prefix_deps) \
--disable-multilib \
--enable-languages=$(gcc_languages) \
$(env_flags) && \
make -j $(make_threads) $(env_flags) && \
$(env_flags_deps) && \
make -j $(make_threads) $(env_flags_deps) && \
make install && \
touch ../installed_compilers

Expand All @@ -303,7 +311,7 @@ if INSTALL_OPENSSL
$(TAR) -zxf openssl-$(OPENSSL_VER).tar.gz
cd openssl-$(OPENSSL_VER) && \
$(env_compilers) ./config \
--prefix=$(prefix) --openssldir=$(prefix)/share/openssl shared; \
--prefix=$(prefix_deps) --openssldir=$(prefix_deps)/share/openssl shared; \
make -j $(make_threads) && \
make install && \
touch ../installed_openssl
Expand All @@ -326,8 +334,8 @@ if INSTALL_PYTHON
$(TAR) -zxf Python-$(PYTHON_VER).tgz
$(MKDIR_P) python-build
cd python-build && \
../Python-$(PYTHON_VER)/configure --prefix=$(prefix) \
--enable-shared $(env_flags) $(env_compilers) && \
../Python-$(PYTHON_VER)/configure --prefix=$(prefix_deps) \
--enable-shared $(env_flags_deps) $(env_compilers) && \
make -j $(make_threads) && \
make install && \
touch ../installed_python
Expand Down Expand Up @@ -371,11 +379,11 @@ openmpi: installed_compilers
$(MKDIR_P) openmpi-build
cd openmpi-build && \
../openmpi-$(OPENMPI_VER)/configure \
--prefix=$(prefix) $(env_flags) $(env_compilers); \
--prefix=$(prefix_deps) $(env_flags_deps) $(env_compilers); \
make -j $(make_threads) && \
make install && \
touch ../installed_mpi
if [ ! -x $(prefix)/bin/mpirun ]; then cd $(prefix)/bin && $(LN_S) mpiexec mpirun; fi
if [ ! -x $(prefix_deps)/bin/mpirun ]; then cd $(prefix_deps)/bin && $(LN_S) mpiexec mpirun; fi


# ----------------------------------------------------------------------
Expand All @@ -396,12 +404,12 @@ mpich: installed_compilers
--enable-shared \
--enable-sharedlibs=$(mpich_sharedarch) \
--disable-static --disable-mpe \
--prefix=$(prefix) \
$(env_flags) $(env_compilers) $(mpich_options) ; \
--prefix=$(prefix_deps) \
$(env_flags_deps) $(env_compilers) $(mpich_options) ; \
make -j $(make_threads) && \
make install && \
touch ../installed_mpi
if [ ! -x $(prefix)/bin/mpirun ]; then cd $(prefix)/bin && $(LN_S) mpiexec mpirun; fi
if [ ! -x $(prefix_deps)/bin/mpirun ]; then cd $(prefix_deps)/bin && $(LN_S) mpiexec mpirun; fi


# ----------------------------------------------------------------------
Expand All @@ -414,7 +422,7 @@ if INSTALL_CPPUNIT
$(MKDIR_P) cppunit-build
cd cppunit-build && \
../cppunit-$(CPPUNIT_VER)/configure \
--prefix=$(prefix) $(env_flags) $(env_compilers); \
--prefix=$(prefix_deps) $(env_flags_deps) $(env_compilers); \
make -j $(make_threads) && \
make install && \
touch ../installed_cppunit
Expand All @@ -438,7 +446,7 @@ if INSTALL_PCRE
$(MKDIR_P) pcre-build
cd pcre-build && \
../pcre-$(PCRE_VER)/configure \
--prefix=$(prefix) $(env_flags) $(env_compilers) ; \
--prefix=$(prefix_deps) $(env_flags_deps) $(env_compilers) ; \
make -j $(make_threads) && \
make install && \
touch ../installed_pcre
Expand All @@ -461,7 +469,7 @@ if INSTALL_SWIG
$(MKDIR_P) swig-build
cd swig-build && \
../swig-$(SWIG_VER)/configure \
--prefix=$(prefix) $(env_flags) $(env_compilers) ; \
--prefix=$(prefix_deps) $(env_flags_deps) $(env_compilers) ; \
make -j $(make_threads) && \
make install && \
touch ../installed_swig
Expand Down Expand Up @@ -489,7 +497,7 @@ if WITH_NUMPY_BLASLAPACK
$(CP) $(top_srcdir)/numpy_blaslapack.cfg numpy-$(NUMPY_VER)/site.cfg
endif
cd numpy-$(NUMPY_VER) && \
$(PYTHON) setup.py install --prefix=$(prefix) && \
$(PYTHON) setup.py install --prefix=$(prefix_deps) && \
touch ../installed_numpy

else
Expand All @@ -512,10 +520,10 @@ if INSTALL_PROJ4
$(MKDIR_P) proj4-build
cd proj4-build && \
../proj-$(PROJ4_VER)/configure \
--prefix=$(prefix) --with-jni=no $(env_flags) $(env_compilers) ; \
--prefix=$(prefix_deps) --with-jni=no $(env_flags_deps) $(env_compilers) ; \
make -j $(make_threads) && \
make install && \
cd $(prefix)/share/proj && \
cd $(prefix_deps)/share/proj && \
$(UNZIP) $(abs_top_builddir)/proj-datumgrid-$(PROJ4_DATUM_VER).zip && \
touch ../installed_proj4

Expand All @@ -542,8 +550,8 @@ if INSTALL_HDF5
cd hdf5-build && \
../hdf5-$(HDF5_VER)/configure \
--enable-parallel --enable-shared --enable-unsupported \
--disable-static --prefix=$(prefix) $(hdf5_options) \
$(env_flags) $(env_mpicompilers) ; \
--disable-static --prefix=$(prefix_deps) $(hdf5_options) \
$(env_flags_deps) $(env_mpicompilers) ; \
make -j $(make_threads) && \
make install && \
touch ../installed_hdf5
Expand All @@ -570,9 +578,9 @@ if INSTALL_H5PY
$(FETCH_SCRIPT) "$(downloader)" h5py-$(H5PY_VER).tar.gz $(DEPS_URL)
$(TAR) -zxf h5py-$(H5PY_VER).tar.gz
cd h5py-$(H5PY_VER) && \
python setup.py configure --hdf5=$(prefix) && \
CC=mpicc $(env_flags) python setup.py build && \
python setup.py install --prefix=$(prefix) && \
python setup.py configure --hdf5=$(prefix_deps) && \
CC=mpicc $(env_flags_deps) python setup.py build && \
python setup.py install --prefix=$(prefix_deps) && \
touch ../installed_h5py
else
if WITH_H5PY
Expand Down Expand Up @@ -603,7 +611,7 @@ endif
$(MKDIR_P) netcdf-build
cd netcdf-build && \
../netcdf-$(NETCDF_VER)/configure \
--prefix=$(prefix) $(env_flags) $(env_mpicompilers) \
--prefix=$(prefix_deps) $(env_flags_deps) $(env_mpicompilers) \
--enable-shared --disable-static $(netcdf_4_options) --disable-dap ; \
sed -e "s/-l //g" libtool > libtool.tmp && mv -f libtool.tmp libtool; \
make -j $(make_threads) && \
Expand Down Expand Up @@ -633,7 +641,7 @@ if INSTALL_NETCDFPY
$(FETCH_SCRIPT) "$(downloader)" netCDF4-$(NETCDFPY_VER).tar.gz $(DEPS_URL)
$(TAR) -zxf netCDF4-$(NETCDFPY_VER).tar.gz
cd netCDF4-$(NETCDFPY_VER) && \
HDF5_DIR=$(prefix) NETCDF4_DIR=$(prefix) $(env_flags) CC=mpicc python setup.py install --prefix=$(prefix) && \
HDF5_DIR=$(prefix_deps) NETCDF4_DIR=$(prefix_deps) $(env_flags_deps) CC=mpicc python setup.py install --prefix=$(prefix_deps) && \
touch ../installed_netcdfpy
else
if WITH_NETCDFPY
Expand All @@ -656,10 +664,10 @@ fiat: installed_numpy
if INSTALL_FIAT
$(FETCH_SCRIPT) "$(downloader)" ScientificPython-$(SCIENTIFICPYTHON_VER).tar.gz $(DEPS_URL)
$(TAR) -zxf ScientificPython-$(SCIENTIFICPYTHON_VER).tar.gz
cd ScientificPython-$(SCIENTIFICPYTHON_VER) && $(PYTHON) setup.py install --prefix=$(prefix)
cd ScientificPython-$(SCIENTIFICPYTHON_VER) && $(PYTHON) setup.py install --prefix=$(prefix_deps)
$(FETCH_SCRIPT) "$(downloader)" FIAT-$(FIAT_VER).tar.gz $(DEPS_URL)
$(TAR) -zxf FIAT-$(FIAT_VER).tar.gz
cd FIAT-$(FIAT_VER) && $(PYTHON) setup.py install --prefix=$(prefix) && touch ../installed_fiat
cd FIAT-$(FIAT_VER) && $(PYTHON) setup.py install --prefix=$(prefix_deps) && touch ../installed_fiat

else
@echo "$@ already installed. Skipping installation."
Expand All @@ -677,7 +685,7 @@ setuptools:
if INSTALL_SETUPTOOLS
$(FETCH_SCRIPT) "$(downloader)" setuptools-$(SETUPTOOLS_VER).zip $(DEPS_URL)
$(UNZIP) setuptools-$(SETUPTOOLS_VER).zip
cd setuptools-$(SETUPTOOLS_VER) && $(PYTHON) setup.py install --prefix=$(prefix) && touch ../installed_setuptools
cd setuptools-$(SETUPTOOLS_VER) && $(PYTHON) setup.py install --prefix=$(prefix_deps) && touch ../installed_setuptools

else
@echo "$@ already installed. Skipping installation."
Expand Down Expand Up @@ -718,7 +726,7 @@ if INSTALL_NEMESIS
$(MKDIR_P) nemesis-build
cd nemesis-build && \
../nemesis-$(NEMESIS_VER)/configure \
--prefix=$(prefix) $(env_flags) $(env_mpicompilers); \
--prefix=$(prefix) $(env_flags_cig) $(env_mpicompilers); \
make && \
make install && \
touch ../installed_nemesis
Expand All @@ -741,6 +749,8 @@ spatialdata_options =
if WITH_TESTING
spatialdata_options += --enable-testing
endif
if WITH_DEBUGGING
endif
if USE_PYLITH_GIT
spatialdata_options += --enable-swig
$(GIT) clone --branch master --single-branch --recursive $(spatialdata_repo) spatialdata-$(SPATIALDATA_VER)
Expand All @@ -752,7 +762,7 @@ endif
$(MKDIR_P) spatialdata-build
cd spatialdata-build && \
../spatialdata-$(SPATIALDATA_VER)/configure \
--prefix=$(prefix) $(env_flags) $(env_compilers) \
--prefix=$(prefix) $(env_flags_cig) $(env_compilers) \
$(spatialdata_options) ; \
make -j $(make_threads) && \
make install
Expand Down Expand Up @@ -780,7 +790,7 @@ if INSTALL_CMAKE
$(FETCH_SCRIPT) "$(downloader)" cmake-$(CMAKE_VER).tar.gz $(DEPS_URL)
$(TAR) -zxf cmake-$(CMAKE_VER).tar.gz
cd cmake-$(CMAKE_VER) && \
$(env_flags) ./bootstrap --verbose --prefix=$(prefix) && make && make install && \
$(env_flags_deps) ./bootstrap --verbose --prefix=$(prefix_deps) && make && make install && \
touch ../installed_cmake
else
@echo "Skipping $@ installation."
Expand All @@ -805,10 +815,10 @@ endif
if WITH_CUDA
petsc_options += --with-cuda=1 --with-cusp=1 --with-thrust=1 --with-nvcc=$(NVCC)
endif
if INSTALL_CMAKE
petsc_build_options = -f gmakefile -j$(make_threads)
if WITH_DEBUGGING
petsc_options += --with-debugging=1
else
petsc_build_options =
petsc_options += --with-debugging=0
endif
if WITH_FORTRAN
petsc_options +=
Expand All @@ -826,11 +836,10 @@ endif
--with-c2html=0 --with-x=0 \
--with-clanguage=C \
--with-mpicompilers=1 \
--with-debugging=0 \
--with-shared-libraries=1 --with-64-bit-points=1 --with-large-file-io=1 \
$(petsc_options) $(env_flags) \
$(petsc_options) $(env_flags_cig) \
PETSC_DIR=$(abs_top_builddir)/petsc-pylith PETSC_ARCH=$(PETSC_ARCH) && \
make $(petsc_build_options) PETSC_DIR=$(abs_top_builddir)/petsc-pylith PETSC_ARCH=$(PETSC_ARCH) && \
make -f gmakefile -j$(make_threads) PETSC_DIR=$(abs_top_builddir)/petsc-pylith PETSC_ARCH=$(PETSC_ARCH) && \
make PETSC_DIR=$(abs_top_builddir)/petsc-pylith install && \
make PETSC_DIR=$(abs_top_builddir)/petsc-pylith test && \
touch ../installed_petsc
Expand All @@ -839,6 +848,7 @@ else
touch installed_petsc
endif


installed_petsc:
$(MAKE) $(AM_MAKEFLAGS) petsc

Expand Down Expand Up @@ -872,7 +882,7 @@ endif
cd pylith-build && \
../pylith-$(PYLITH_VER)/configure \
--prefix=$(prefix) $(pylith_options) \
$(env_flags) $(env_mpicompilers) \
$(env_flags_cig) $(env_mpicompilers) \
PETSC_DIR=$(PETSC_DIR) PETSC_ARCH=$(PETSC_ARCH) ; \
make -j $(make_threads) && \
make install
Expand Down
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