#18 add exit 1 to run_xx errors

lib/shell/run_R.sh

@@ -20,15 +20,15 @@ run_R () {
         error_time=$(date '+%Y-%m-%d %H:%M:%S')
         echo -e "\033[0;31mProgram error\033[0m at ${error_time}: ${rCmd} not found. Make sure command line usage is properly set up." 
         echo "Program Error at ${error_time}: ${rCmd} not found." >> "${logfile}"
-        return 1  # exit early with an error code
+        exit 1  # exit early with an error code
     fi
 
     # check if the target script exists
     if [ ! -f "${program}" ]; then
         error_time=$(date '+%Y-%m-%d %H:%M:%S')
         echo -e "\033[0;31mProgram error\033[0m at ${error_time}: script ${program} not found." 
         echo "Program Error at ${error_time}: script ${program} not found." >> "${logfile}"
-        return 1
+        exit 1
     fi
 
     # capture the content of output folder before running the script

lib/shell/run_latex.sh

@@ -43,15 +43,15 @@ run_latex() {
         error_time=$(date '+%Y-%m-%d %H:%M:%S')
         echo -e "\033[0;31mProgram error\033[0m at ${error_time}: latexmk not found. Ensure LaTeX is installed." 
         echo "Program Error at ${error_time}: latexmk not found." >> "${logfile}"
-        return 1
+        exit 1
     fi
 
     # check if the target script exists
     if [ ! -f "${programname}.tex" ]; then
         error_time=$(date '+%Y-%m-%d %H:%M:%S')
         echo -e "\033[0;31mProgram error\033[0m at ${error_time}: script ${programname}.tex not found." 
         echo "Program Error at ${error_time}: script ${programname}.tex not found." >> "${logfile}"
-        return 1
+        exit 1
     fi
 
     # capture the content of output folder before running the script

lib/shell/run_python.sh

@@ -20,15 +20,15 @@ run_python () {
         error_time=$(date '+%Y-%m-%d %H:%M:%S')
         echo -e "\033[0;31mProgram error\033[0m at ${error_time}: ${pythonCmd} not found. Make sure command line usage is properly set up." 
         echo "Program Error at ${error_time}: ${pythonCmd} not found." >> "${logfile}"
-        return 1  # exit early with an error code
+        exit 1  # exit early with an error code
     fi
 
     # check if the target script exists
     if [ ! -f "${program}" ]; then
         error_time=$(date '+%Y-%m-%d %H:%M:%S')
         echo -e "\033[0;31mProgram error\033[0m at ${error_time}: script ${program} not found." 
         echo "Program Error at ${error_time}: script ${program} not found." >> "${logfile}"
-        return 1
+        exit 1
     fi
 
     # capture the content of output folder before running the script
@@ -56,6 +56,7 @@ run_python () {
             echo -e "\033[0;31mWarning\033[0m: there was an error, but files where created. Check log." 
             echo -e "\nWarning: There was an error, but these files were created: $created_files" >> "${logfile}"  # log created files
         fi
+        exit 1
     else
         echo "Script ${program} finished successfully at $(date '+%Y-%m-%d %H:%M:%S')" | tee -a "${logfile}"
         echo "Output: $output" >> "${logfile}"  # log output

lib/shell/run_shell.sh

@@ -17,7 +17,7 @@ run_shell () {
         error_time=$(date '+%Y-%m-%d %H:%M:%S')
         echo -e "\033[0;31mProgram error\033[0m at ${error_time}: script ${program} not found." 
         echo "Program Error at ${error_time}: script ${program} not found." >> "${logfile}"
-        return 1
+        exit 1
     fi
 
     # capture the content of the output folder before running the script
@@ -45,6 +45,7 @@ run_shell () {
             echo -e "\033[0;31mWarning\033[0m: there was an error, but files where created. Check log." 
             echo -e "\nWarning: There was an error, but these files were created: $created_files" >> "${logfile}"  # log created files
         fi
+        exit 1
     else
         echo "Script ${program} finished successfully at $(date '+%Y-%m-%d %H:%M:%S')" | tee -a "${logfile}"
         echo "Output: $output" >> "${logfile}"  # log output

lib/shell/run_stata.sh

@@ -29,7 +29,7 @@ run_stata() {
         error_time=$(date '+%Y-%m-%d %H:%M:%S')
         echo -e "\033[0;31mProgram error\033[0m at ${error_time}: script ${program} not found." 
         echo "Program Error at ${error_time}: script ${program} not found." >> "${logfile}"
-        return 1
+        exit 1
     fi
 
     # capture the content of output folder before running the script