funkyheatmappy

Funkyheatmap in Python: Generating Funky Heatmaps for Data Frames

Features

• Data input
• Column info
• Row info
• Column groups
• Row groups
• Palettes
• Geom: funkyrect
• Geom: rect
• Geom: bar
• Geom: pie
• Geom: text
• Numerical transformations
• Positioning options
• Subfigure labels

Installation

You can install funkyheatmap like so::

pip install git+https://github.com/funkyheatmap/funkyheatmappy

You can also download funkyheatmap as a standalone executable or a Nextflow pipeline.

More information

• The reference documentation on funkyheatmap() details the exact formats of each annotation object that you can pass to it.
• In this python module we use funkyheatmap to regenerate the figures from Saelens et al. 2019, doi:10.1038/s41587-019-0071-9.