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docs: add CLI architecture deep-dive guides
- #1087
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docs: add CLI architecture deep-dive guides
#1087
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docs: add CLI architecture deep-dive guides
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docs: fix role permissions matrix and secret naming
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docs: fix CLI command tree and harness YAML types
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docs: fix security config structure in harness YAML
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docs: remove confusing APP_PRIVATE_KEY reference from secrets list
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docs: fix variable name and improve examples
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docs: fix plugin examples to use actual Claude Code plugins
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docs: align harness examples with actual scaffold templates
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docs: clarify harness override is file-replacement, not merge
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fix: remove trailing whitespace from customizing-agents.md
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