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perf(group): parallel queryname grouping for the correct/align/filter chains - #957

Merged
nh13 merged 11 commits into
mainfrom
nh/parallel-queryname-grouping
Sep 14, 2026
Merged

perf(group): parallel queryname grouping for the correct/align/filter chains#957
nh13 merged 11 commits into
mainfrom
nh/parallel-queryname-grouping

fix(pipeline): bound the open queryname-run carry in both cutters

7a5c074
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Codecov / codecov/project succeeded Sep 14, 2026 in 1s

96.07% (+0.04%) compared to a9814c2

View this Pull Request on Codecov

96.07% (+0.04%) compared to a9814c2

Details

Codecov Report

❌ Patch coverage is 94.09006% with 63 lines in your changes missing coverage. Please review.
✅ Project coverage is 96.07%. Comparing base (a9814c2) to head (7a5c074).
⚠️ Report is 2 commits behind head on main.

Files with missing lines Patch % Lines
src/lib/pipeline/steps/boundaries/state.rs 92.92% 24 Missing ⚠️
src/lib/pipeline/chains/builder.rs 87.91% 11 Missing ⚠️
src/lib/pipeline/steps/source/read_sam_chunks.rs 96.84% 11 Missing ⚠️
src/lib/pipeline/steps/group/assemble.rs 94.36% 8 Missing ⚠️
src/lib/pipeline/steps/align_and_merge.rs 42.85% 4 Missing ⚠️
src/lib/pipeline/steps/parse/decode.rs 81.25% 3 Missing ⚠️
src/lib/read_info.rs 0.00% 1 Missing ⚠️
src/lib/template.rs 98.38% 1 Missing ⚠️
Additional details and impacted files 
@@            Coverage Diff             @@
##             main     #957      +/-   ##
==========================================
+ Coverage   96.03%   96.07%   +0.04%     
==========================================
  Files         291      292       +1     
  Lines      143872   144996    +1124     
==========================================
+ Hits       138167   139306    +1139     
+ Misses       5705     5690      -15

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