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fix(runall): wire --methylation-mode/--ref into the fused filter stage - #944

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nh13 merged 1 commit into
mainfrom
nh/runall-filter-methylation-wiring
Sep 11, 2026
Merged

nh13 merged 1 commit into
mainfrom
nh/runall-filter-methylation-wiring

fix(runall): wire --methylation-mode/--ref into the fused filter stage

928deb0
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Codecov / codecov/project succeeded Sep 10, 2026 in 1s

94.37% (-0.01%) compared to 1da9603

View this Pull Request on Codecov

94.37% (-0.01%) compared to 1da9603

Details

Codecov Report

❌ Patch coverage is 99.15966% with 1 line in your changes missing coverage. Please review.
✅ Project coverage is 94.37%. Comparing base (1da9603) to head (928deb0).
⚠️ Report is 5 commits behind head on main.

Files with missing lines Patch % Lines
src/lib/commands/runall.rs 99.15% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #944      +/-   ##
==========================================
- Coverage   94.38%   94.37%   -0.01%     
==========================================
  Files         304      304              
  Lines      150599   150713     +114     
==========================================
+ Hits       142144   142239      +95     
- Misses       8455     8474      +19     

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