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chore: release v0.3.0 - #309
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## main #309 +/- ##
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- Coverage 91.08% 91.03% -0.06%
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Lines 51308 51308
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- Hits 46736 46706 -30
- Misses 4572 4602 +30 ☔ View full report in Codecov by Harness. 🚀 New features to boost your workflow:
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📝 WalkthroughWalkthroughBumps workspace version 0.2.0 → 0.3.0 in Cargo.toml and updates internal fgumi-* workspace dependency pins to 0.3.0 (paths retained; fgumi-consensus keeps default-features = false). Adds generated 0.3.0 changelog sections dated 2026-06-03 (with git-cliff markers) to the root CHANGELOG.md and to each crate CHANGELOG.md included in the PR. 🚥 Pre-merge checks | ✅ 5✅ Passed checks (5 passed)
✏️ Tip: You can configure your own custom pre-merge checks in the settings. ✨ Finishing Touches📝 Generate docstrings
🧪 Generate unit tests (beta)
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Actionable comments posted: 2
🤖 Prompt for all review comments with AI agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
Inline comments:
In `@crates/fgumi-bam-io/CHANGELOG.md`:
- Around line 24-26: Remove the orphaned "### Refactor" block that duplicates PR
`#323`: delete the standalone lines "### Refactor" and the following bullet "-
Extracted the BAM-pipeline I/O layer into the new `fgumi-bam-io` crate..." so
that only the entry under the 0.3.0 section (PR `#323`) remains; search for the
duplicate text string or PR `#323` to locate the orphaned block and remove it from
CHANGELOG.md.
In `@crates/fgumi-sort/CHANGELOG.md`:
- Around line 29-31: Remove the orphaned duplicate "### Refactor" block that
repeats PR `#323` (the lines describing extraction of the sort engine into the
`fgumi-sort` crate) — locate the standalone "### Refactor" header and its bullet
about `fgumi-sort` and delete that block so the only mention remains under the
0.3.0 section.
🪄 Autofix (Beta)
Fix all unresolved CodeRabbit comments on this PR:
- Push a commit to this branch (recommended)
- Create a new PR with the fixes
ℹ️ Review info
⚙️ Run configuration
Configuration used: Organization UI
Review profile: CHILL
Plan: Pro
Run ID: bba5d51b-9c59-46f0-845b-fb40e40227ce
⛔ Files ignored due to path filters (1)
Cargo.lockis excluded by!**/*.lock
📒 Files selected for processing (13)
CHANGELOG.mdCargo.tomlcrates/fgumi-bam-io/CHANGELOG.mdcrates/fgumi-bgzf/CHANGELOG.mdcrates/fgumi-consensus/CHANGELOG.mdcrates/fgumi-dna/CHANGELOG.mdcrates/fgumi-metrics/CHANGELOG.mdcrates/fgumi-raw-bam/CHANGELOG.mdcrates/fgumi-sam/CHANGELOG.mdcrates/fgumi-simd-fastq/CHANGELOG.mdcrates/fgumi-sort/CHANGELOG.mdcrates/fgumi-tag/CHANGELOG.mdcrates/fgumi-umi/CHANGELOG.md
✅ Files skipped from review due to trivial changes (7)
- crates/fgumi-tag/CHANGELOG.md
- crates/fgumi-metrics/CHANGELOG.md
- crates/fgumi-raw-bam/CHANGELOG.md
- crates/fgumi-dna/CHANGELOG.md
- crates/fgumi-consensus/CHANGELOG.md
- crates/fgumi-umi/CHANGELOG.md
- CHANGELOG.md
🚧 Files skipped from review as they are similar to previous changes (4)
- crates/fgumi-simd-fastq/CHANGELOG.md
- crates/fgumi-sam/CHANGELOG.md
- crates/fgumi-bgzf/CHANGELOG.md
- Cargo.toml
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♻️ Duplicate comments (2)
crates/fgumi-bam-io/CHANGELOG.md (1)
28-30:⚠️ Potential issue | 🟡 Minor | ⚡ Quick winRemove orphaned duplicate refactor block after the git-cliff marker.
Line 28-Line 30 repeats PR
#323content already listed in Line 24, and it sits outside a version section.Suggested minimal fix
<!-- generated by git-cliff --> - -### Refactor - -- Extracted the BAM-pipeline I/O layer into the new `fgumi-bam-io` crate. The main `fgumi` binary now consumes it as a workspace dependency; behavior is unchanged.🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the rest with a brief reason, keep changes minimal, and validate. In `@crates/fgumi-bam-io/CHANGELOG.md` around lines 28 - 30, Remove the orphaned duplicate "Refactor" block that repeats PR `#323` content (the paragraph starting "Extracted the BAM-pipeline I/O layer into the new `fgumi-bam-io` crate...") which appears after the git-cliff marker and outside any version section; keep the original entry already listed earlier and delete this duplicate block so the changelog contains only the single, correctly-scoped refactor note.crates/fgumi-sort/CHANGELOG.md (1)
34-36:⚠️ Potential issue | 🟡 Minor | ⚡ Quick winDelete the orphaned duplicate refactor section below the release marker.
Line 34-Line 36 duplicates PR
#323already present in the 0.3.0 section (Line 29).Suggested minimal fix
<!-- generated by git-cliff --> - -### Refactor - -- Extracted the sort engine into the new `fgumi-sort` crate. The main `fgumi` binary now consumes it as a workspace dependency; behavior is unchanged.🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the rest with a brief reason, keep changes minimal, and validate. In `@crates/fgumi-sort/CHANGELOG.md` around lines 34 - 36, Remove the duplicate "### Refactor" entry that repeats PR `#323` ("Extracted the sort engine into the new `fgumi-sort` crate...") which appears below the release marker; keep the original entry in the 0.3.0 section and delete the orphaned duplicate block (the "### Refactor" header and its bullet) so the changelog no longer contains that repeated text.
🤖 Prompt for all review comments with AI agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
Duplicate comments:
In `@crates/fgumi-bam-io/CHANGELOG.md`:
- Around line 28-30: Remove the orphaned duplicate "Refactor" block that repeats
PR `#323` content (the paragraph starting "Extracted the BAM-pipeline I/O layer
into the new `fgumi-bam-io` crate...") which appears after the git-cliff marker
and outside any version section; keep the original entry already listed earlier
and delete this duplicate block so the changelog contains only the single,
correctly-scoped refactor note.
In `@crates/fgumi-sort/CHANGELOG.md`:
- Around line 34-36: Remove the duplicate "### Refactor" entry that repeats PR
`#323` ("Extracted the sort engine into the new `fgumi-sort` crate...") which
appears below the release marker; keep the original entry in the 0.3.0 section
and delete the orphaned duplicate block (the "### Refactor" header and its
bullet) so the changelog no longer contains that repeated text.
ℹ️ Review info
⚙️ Run configuration
Configuration used: Organization UI
Review profile: CHILL
Plan: Pro
Run ID: 4ba3f606-e324-415e-8694-866e5e4942be
⛔ Files ignored due to path filters (1)
Cargo.lockis excluded by!**/*.lock
📒 Files selected for processing (13)
CHANGELOG.mdCargo.tomlcrates/fgumi-bam-io/CHANGELOG.mdcrates/fgumi-bgzf/CHANGELOG.mdcrates/fgumi-consensus/CHANGELOG.mdcrates/fgumi-dna/CHANGELOG.mdcrates/fgumi-metrics/CHANGELOG.mdcrates/fgumi-raw-bam/CHANGELOG.mdcrates/fgumi-sam/CHANGELOG.mdcrates/fgumi-simd-fastq/CHANGELOG.mdcrates/fgumi-sort/CHANGELOG.mdcrates/fgumi-tag/CHANGELOG.mdcrates/fgumi-umi/CHANGELOG.md
✅ Files skipped from review due to trivial changes (6)
- crates/fgumi-umi/CHANGELOG.md
- crates/fgumi-tag/CHANGELOG.md
- crates/fgumi-sam/CHANGELOG.md
- crates/fgumi-metrics/CHANGELOG.md
- CHANGELOG.md
- crates/fgumi-simd-fastq/CHANGELOG.md
🚧 Files skipped from review as they are similar to previous changes (4)
- crates/fgumi-dna/CHANGELOG.md
- crates/fgumi-consensus/CHANGELOG.md
- crates/fgumi-bgzf/CHANGELOG.md
- Cargo.toml
This branch was previously deployed
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🤖 New release
fgumi-tag: 0.2.0 -> 0.3.0fgumi-raw-bam: 0.2.0 -> 0.3.0fgumi-bam-io: 0.2.0 -> 0.3.0fgumi-bgzf: 0.2.0 -> 0.3.0fgumi-dna: 0.2.0 -> 0.3.0fgumi-metrics: 0.2.0 -> 0.3.0fgumi-sam: 0.2.0 -> 0.3.0fgumi-consensus: 0.2.0 -> 0.3.0fgumi-simd-fastq: 0.2.0 -> 0.3.0fgumi-sort: 0.2.0 -> 0.3.0fgumi-umi: 0.2.0 -> 0.3.0fgumi: 0.2.0 -> 0.3.0Changelog
fgumi-tagfgumi-raw-bamfgumi-bam-iofgumi-bgzffgumi-dnafgumi-metricsfgumi-samfgumi-consensusfgumi-simd-fastqfgumi-sortfgumi-umifgumiThis PR was generated with release-plz.