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20 changes: 20 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,26 @@

All notable changes to this project will be documented in this file.

## [0.1.2] - 2026-03-03

### Miscellaneous Tasks

- Lockstep workspace versions and fix publish workflow ([#132](https://github.com/fulcrumgenomics/fgumi/pull/132))
- Bump noodles in the all-cargo-deps group ([#131](https://github.com/fulcrumgenomics/fgumi/pull/131))

### Refactor

- Improve code reuse, quality, and efficiency in fgumi-metrics ([#130](https://github.com/fulcrumgenomics/fgumi/pull/130))
- Remove dead code and unify duplicated logic in fgumi-consensus ([#139](https://github.com/fulcrumgenomics/fgumi/pull/139))
- Consolidate duplicated hash logic and remove dead code ([#140](https://github.com/fulcrumgenomics/fgumi/pull/140))
- Remove dead code and improve efficiency in consensus commands ([#154](https://github.com/fulcrumgenomics/fgumi/pull/154))
- Extract complement_base_preserve_case and remove unnecessary binding ([#142](https://github.com/fulcrumgenomics/fgumi/pull/142))
- Deduplicate core lib modules and remove redundant state ([#151](https://github.com/fulcrumgenomics/fgumi/pull/151))
- Extract generic verify helper and deduplicate test code ([#152](https://github.com/fulcrumgenomics/fgumi/pull/152))
- Deduplicate simulate utilities and clip header logic ([#155](https://github.com/fulcrumgenomics/fgumi/pull/155))

<!-- generated by git-cliff -->

## [0.1.1] - 2026-02-27

### Bug Fixes
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34 changes: 20 additions & 14 deletions Cargo.lock

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

16 changes: 8 additions & 8 deletions Cargo.toml
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Expand Up @@ -3,20 +3,20 @@ members = [".", "crates/fgumi-raw-bam", "crates/fgumi-dna", "crates/fgumi-bgzf",
resolver = "2"

[workspace.package]
version = "0.1.1"
version = "0.1.2"
edition = "2024"
rust-version = "1.87.0"
repository = "https://github.com/fulcrumgenomics/fgumi"
license = "MIT"

[workspace.dependencies]
fgumi-bgzf = { version = "0.1.1", path = "crates/fgumi-bgzf" }
fgumi-consensus = { version = "0.1.1", path = "crates/fgumi-consensus", default-features = false }
fgumi-dna = { version = "0.1.1", path = "crates/fgumi-dna" }
fgumi-metrics = { version = "0.1.1", path = "crates/fgumi-metrics" }
fgumi-raw-bam = { version = "0.1.1", path = "crates/fgumi-raw-bam" }
fgumi-sam = { version = "0.1.1", path = "crates/fgumi-sam" }
fgumi-umi = { version = "0.1.1", path = "crates/fgumi-umi" }
fgumi-bgzf = { version = "0.1.2", path = "crates/fgumi-bgzf" }
fgumi-consensus = { version = "0.1.2", path = "crates/fgumi-consensus", default-features = false }
fgumi-dna = { version = "0.1.2", path = "crates/fgumi-dna" }
fgumi-metrics = { version = "0.1.2", path = "crates/fgumi-metrics" }
fgumi-raw-bam = { version = "0.1.2", path = "crates/fgumi-raw-bam" }
fgumi-sam = { version = "0.1.2", path = "crates/fgumi-sam" }
fgumi-umi = { version = "0.1.2", path = "crates/fgumi-umi" }

[package]
name = "fgumi"
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16 changes: 16 additions & 0 deletions crates/fgumi-bgzf/CHANGELOG.md
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@@ -0,0 +1,16 @@
# Changelog

All notable changes to this project will be documented in this file.

## [0.1.2] - 2026-03-03

### Miscellaneous Tasks

- Lockstep workspace versions and fix publish workflow ([#132](https://github.com/fulcrumgenomics/fgumi/pull/132))

### Refactor

- Deduplicate decompression logic and remove dead code ([#134](https://github.com/fulcrumgenomics/fgumi/pull/134))
- Extract shared decompress_and_verify helper ([#143](https://github.com/fulcrumgenomics/fgumi/pull/143))

<!-- generated by git-cliff -->
13 changes: 13 additions & 0 deletions crates/fgumi-consensus/CHANGELOG.md
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Expand Up @@ -2,6 +2,19 @@

All notable changes to this project will be documented in this file.

## [0.1.2] - 2026-03-03

### Miscellaneous Tasks

- Lockstep workspace versions and fix publish workflow ([#132](https://github.com/fulcrumgenomics/fgumi/pull/132))
- Bump noodles in the all-cargo-deps group ([#131](https://github.com/fulcrumgenomics/fgumi/pull/131))

### Refactor

- Remove dead code and unify duplicated logic in fgumi-consensus ([#139](https://github.com/fulcrumgenomics/fgumi/pull/139))

<!-- generated by git-cliff -->

## [0.1.1] - 2026-02-27

### Miscellaneous Tasks
Expand Down
16 changes: 16 additions & 0 deletions crates/fgumi-dna/CHANGELOG.md
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@@ -0,0 +1,16 @@
# Changelog

All notable changes to this project will be documented in this file.

## [0.1.2] - 2026-03-03

### Miscellaneous Tasks

- Lockstep workspace versions and fix publish workflow ([#132](https://github.com/fulcrumgenomics/fgumi/pull/132))

### Refactor

- Simplify redundant try_from casts and use byte iteration ([#133](https://github.com/fulcrumgenomics/fgumi/pull/133))
- Extract complement_base_preserve_case and remove unnecessary binding ([#142](https://github.com/fulcrumgenomics/fgumi/pull/142))

<!-- generated by git-cliff -->
14 changes: 14 additions & 0 deletions crates/fgumi-metrics/CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,20 @@

All notable changes to this project will be documented in this file.

## [0.1.2] - 2026-03-03

### Miscellaneous Tasks

- Lockstep workspace versions and fix publish workflow ([#132](https://github.com/fulcrumgenomics/fgumi/pull/132))
- Bump noodles in the all-cargo-deps group ([#131](https://github.com/fulcrumgenomics/fgumi/pull/131))

### Refactor

- Improve code reuse, quality, and efficiency in fgumi-metrics ([#130](https://github.com/fulcrumgenomics/fgumi/pull/130))
- Consolidate UmiCountTracker and remove ALL_REJECTIONS duplication ([#145](https://github.com/fulcrumgenomics/fgumi/pull/145))

<!-- generated by git-cliff -->

## [0.1.1] - 2026-02-27

### Miscellaneous Tasks
Expand Down
14 changes: 14 additions & 0 deletions crates/fgumi-raw-bam/CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,20 @@

All notable changes to this project will be documented in this file.

## [0.1.2] - 2026-03-03

### Miscellaneous Tasks

- Lockstep workspace versions and fix publish workflow ([#132](https://github.com/fulcrumgenomics/fgumi/pull/132))
- Bump noodles in the all-cargo-deps group ([#131](https://github.com/fulcrumgenomics/fgumi/pull/131))

### Refactor

- Deduplicate aux iteration, use field accessors, consolidate decode tables ([#135](https://github.com/fulcrumgenomics/fgumi/pull/135))
- Extract shared aux traversal and CIGAR op helpers ([#144](https://github.com/fulcrumgenomics/fgumi/pull/144))

<!-- generated by git-cliff -->

## [0.1.1] - 2026-02-27

### Miscellaneous Tasks
Expand Down
13 changes: 13 additions & 0 deletions crates/fgumi-sam/CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,19 @@

All notable changes to this project will be documented in this file.

## [0.1.2] - 2026-03-03

### Miscellaneous Tasks

- Lockstep workspace versions and fix publish workflow ([#132](https://github.com/fulcrumgenomics/fgumi/pull/132))
- Bump noodles in the all-cargo-deps group ([#131](https://github.com/fulcrumgenomics/fgumi/pull/131))

### Refactor

- Reduce duplication and improve code reuse in fgumi-sam ([#138](https://github.com/fulcrumgenomics/fgumi/pull/138))

<!-- generated by git-cliff -->

## [0.1.1] - 2026-02-27

### Miscellaneous Tasks
Expand Down
16 changes: 16 additions & 0 deletions crates/fgumi-umi/CHANGELOG.md
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@@ -0,0 +1,16 @@
# Changelog

All notable changes to this project will be documented in this file.

## [0.1.2] - 2026-03-03

### Miscellaneous Tasks

- Lockstep workspace versions and fix publish workflow ([#132](https://github.com/fulcrumgenomics/fgumi/pull/132))

### Refactor

- Improve code quality and efficiency in fgumi-umi ([#137](https://github.com/fulcrumgenomics/fgumi/pull/137))
- Use binary search for count_index and deduplicate MoleculeId formatting ([#146](https://github.com/fulcrumgenomics/fgumi/pull/146))

<!-- generated by git-cliff -->
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