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fix(clip): keep MM/ML in step with hard-clipped and unmapped reads - #1012

Merged
nh13 merged 1 commit into
mainfrom
nh/clip-hard-trims-modifications
Oct 2, 2026
Merged

nh13 merged 1 commit into
mainfrom
nh/clip-hard-trims-modifications

fix(clip): keep MM/ML in step with hard-clipped and unmapped reads

3770c87
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Codecov / codecov/project succeeded Oct 2, 2026 in 0s

96.42% (-0.01%) compared to d773880

View this Pull Request on Codecov

96.42% (-0.01%) compared to d773880

Details

Codecov Report

❌ Patch coverage is 96.93252% with 5 lines in your changes missing coverage. Please review.
✅ Project coverage is 96.42%. Comparing base (d773880) to head (3770c87).

Files with missing lines Patch % Lines
crates/fgumi-consensus/src/modifications.rs 96.66% 2 Missing ⚠️
src/lib/pipeline/chains/commands/clip.rs 94.28% 2 Missing ⚠️
crates/fgumi-sam/src/clipper.rs 88.88% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1012      +/-   ##
==========================================
- Coverage   96.42%   96.42%   -0.01%     
==========================================
  Files         299      299              
  Lines      151026   151142     +116     
==========================================
+ Hits       145623   145733     +110     
- Misses       5403     5409       +6     

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