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Added deletion of CSI indices in DeleteBam. #364

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Aug 22, 2019
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Added deletion of CSI indices in DeleteBam. #364

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1 change: 1 addition & 0 deletions tasks/src/main/scala/dagr/tasks/picard/DeleteBam.scala
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Original file line number Diff line number Diff line change
Expand Up @@ -44,6 +44,7 @@ class DeleteBam(val bam: Path*) extends SimpleInJvmTask {
PathUtil.extensionOf(b) match {
case Some(".bam") =>
paths += PathUtil.pathTo(bam.toString + ".bai")
paths += PathUtil.pathTo(bam.toString + ".csi")
paths += PathUtil.replaceExtension(b, ".bai")
case Some(".cram") =>
paths += PathUtil.pathTo(bam.toString + ".crai")
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