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Patch app.js to work with jquery v1.9.0
Ideally this would be fixed in yard. I've opened a PR [1] with the fix, but haven't yet had any response at all - hence why I'm patching this. Note that we now have to checkout both app.js & jquery.js after the docs are generated in order to override the versions of these files generated by yard. [1]: lsegal/yard#1351
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