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Fix problem that some system configs are overwritten mistakenly
Options explicitly specified in command line should be preferred to options specified in system config. However, options that have a default value, such as `suppress_repeated_stacktrace`, are preferred even when they are not specified in the command line. Because of this, the following setting is not be reflected. ``` <system> suppress_repeated_stacktrace false </system> ``` Signed-off-by: Daijiro Fukuda <[email protected]>
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