Skip to content

florenciacastello/target_chembl

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

80 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

target_chembl

mol_trg.py: returns all target related to the search compound according to API. INPUT=.txt list of Chemble_id (compound). OUTPUT= .csv table containing 3 columns trg_chembl_ID, 'pchembl_median', 'activity_comment'.

trg_mol.py: returns all compounds related to the search target according to API. INPUT= .txt list of Chemble_id (target). OUTPUT= .csv table containing 4 columns mol_chembl_ID, 'pchembl_median', 'activity_comment', 'target_organism'.

tanimoto.py: returns all compounds related to the search SMILES according to the Tanimoto similarity score given (60% Default). INPUT= .txt SMILES list. OUTPUT= .csv table containing 3 columns 'mol_chembl_id', 'similarity','smiles'

pfam_mol_assay.py: returns all compounds related to the search pfam ID according to ChEMBL data base via assay related information. INPUT= .txt PFAM ID list. OUTPUT= .csv table containing 2 columns of 'mol_chembl_id': "Dudoso", "Confiable".

pfam_mol_mech.py: returns all compounds related to the search pfam ID according to ChEMBL data base via mechanism related information. INPUT= .txt PFAM ID list. OUTPUT= .csv table containing 2 columns of 'mol_chembl_id': "Dudoso", "Confiable".

SMILES_file: SMILES list

OUT: File with two columns. First column ChEMBL_ID, second column SMILES. Separated by "\t". xPfamID + xTanimoto