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Facing problem in running Viralrecall #19
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Have you tried python 3.5? I think later versions have pandas issues.
Frank
…On Sat, Feb 11, 2023, 1:52 PM vmevada102 ***@***.***> wrote:
After installing into the Conda environment i am facing following problem,
Traceback (most recent call last):
File "viralrecall.py", line 733, in
status = main()
File "viralrecall.py", line 728, in main
run_program(input, project, database, window, phagesize, minscore, minhit,
evalue, cpus, plotflag, redo, flanking, batch, summary_file, contiglevel)
File "viralrecall.py", line 401, in run_program
df = pandas.concat([df, s1], axis=1, sort=True)
TypeError: concat() got an unexpected keyword argument 'sort'
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I hve set the Python 3.5.2 May i downgrade the python version? |
And is this error on the test data or new data you are using?
…On Sat, Feb 11, 2023, 8:08 PM vmevada102 ***@***.***> wrote:
I hve set the Python 3.5.6 in conda environment as recommended into the
installation.
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This error was found on both dataset. Test data as well as own data |
Kindly help me resolve the issue |
This appears to be an issue specific to pandas - you will need to troubleshoot the version of pandas you have installed. Please see https://stackoverflow.com/questions/54312781/python3-prophet-model-predict-throws-typeerror-concat-got-an-unexpected-key |
I run viralrecall with pandas v1.0.5 because I was running into all sorts of issues with the recent pandas version |
After installing into the Conda environment i am facing following problem,
Traceback (most recent call last):
File "viralrecall.py", line 733, in
status = main()
File "viralrecall.py", line 728, in main
run_program(input, project, database, window, phagesize, minscore, minhit, evalue, cpus, plotflag, redo, flanking, batch, summary_file, contiglevel)
File "viralrecall.py", line 401, in run_program
df = pandas.concat([df, s1], axis=1, sort=True)
TypeError: concat() got an unexpected keyword argument 'sort'
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