Facing problem in running Viralrecall

[vmevada102]

After installing into the Conda environment i am facing following problem,

Traceback (most recent call last):
File "viralrecall.py", line 733, in
status = main()
File "viralrecall.py", line 728, in main
run_program(input, project, database, window, phagesize, minscore, minhit, evalue, cpus, plotflag, redo, flanking, batch, summary_file, contiglevel)
File "viralrecall.py", line 401, in run_program
df = pandas.concat([df, s1], axis=1, sort=True)
TypeError: concat() got an unexpected keyword argument 'sort'

[faylward]

Have you tried python 3.5? I think later versions have pandas issues. Frank

…

On Sat, Feb 11, 2023, 1:52 PM vmevada102 ***@***.***> wrote: After installing into the Conda environment i am facing following problem, Traceback (most recent call last): File "viralrecall.py", line 733, in status = main() File "viralrecall.py", line 728, in main run_program(input, project, database, window, phagesize, minscore, minhit, evalue, cpus, plotflag, redo, flanking, batch, summary_file, contiglevel) File "viralrecall.py", line 401, in run_program df = pandas.concat([df, s1], axis=1, sort=True) TypeError: concat() got an unexpected keyword argument 'sort' — Reply to this email directly, view it on GitHub <#19>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACPFN7SU6RVHH57JXIL6MZDWW7NWVANCNFSM6AAAAAAUY26THI> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[vmevada102]

I hve set the Python 3.5.2
in conda environment as recommended into the installation.

May i downgrade the python version?

[faylward]

And is this error on the test data or new data you are using?

…

On Sat, Feb 11, 2023, 8:08 PM vmevada102 ***@***.***> wrote: I hve set the Python 3.5.6 in conda environment as recommended into the installation. — Reply to this email directly, view it on GitHub <#19 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACPFN7RPGZOD4VPVTZNPBE3WXAZX5ANCNFSM6AAAAAAUY26THI> . You are receiving this because you commented.Message ID: ***@***.***>

[vmevada102]

This error was found on both dataset.

Test data as well as own data

[vmevada102]

Kindly help me resolve the issue

[faylward]

This appears to be an issue specific to pandas - you will need to troubleshoot the version of pandas you have installed. Please see https://stackoverflow.com/questions/54312781/python3-prophet-model-predict-throws-typeerror-concat-got-an-unexpected-key

[abdealijivaji]

I run viralrecall with pandas v1.0.5 because I was running into all sorts of issues with the recent pandas version