We developed a program to simulate the dynamics of hydrocarbon molecules using the consistent force field method devised by Shneior Lifson and Arieh Warshel.
mol_simulation.py produces the CSV files used to create graphs and animations of the molecule dynamics.
mol_notebook.ipynb converts these CSV files to readable graphs, some of which were used in our paper linked below.
mol_display.py reads these CSV files and renders them with VPython, which we screen-recorded and have posted on YouTube, also linked below.
Paper: https://drive.google.com/file/d/1iTxnto4CWynYNn1BvOq8889JQxFhdTYQ
CSV files (7zip or equivalent required to open): https://drive.google.com/file/d/1DCI9PWngpDCOwGWAZNWLLJBHga-x_eFh
YouTube: https://youtu.be/iCUkThONkhc