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@epiverse-trace

Epiverse-TRACE

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  1. sivirep sivirep Public

    Data Wrangling and Automated Reports from 'SIVIGILA' source

    R 43 4

  2. epiparameter epiparameter Public

    R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

    R 33 12

  3. serofoi serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    R 18 4

  4. vaccineff vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

    R 16 4

  5. cfr cfr Public

    R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

    R 13 4

  6. epiCo epiCo Public

    R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia

    R 12 1

Repositories

Showing 10 of 60 repositories
  • tutorials-middle Public
    epiverse-trace/tutorials-middle’s past year of commit activity
    R 3 2 66 (2 issues need help) 2 Updated Feb 20, 2025
  • safeframe Public

    Tagging, validating, and safeguarding data to help harden data pipelines.

    epiverse-trace/safeframe’s past year of commit activity
    R 0 0 4 3 Updated Feb 20, 2025
  • simulist Public

    An R package for simulating line lists

    epiverse-trace/simulist’s past year of commit activity
    R 9 1 10 0 Updated Feb 19, 2025
  • serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    epiverse-trace/serofoi’s past year of commit activity
    R 18 4 16 1 Updated Feb 19, 2025
  • epiverse-trace.github.io Public

    Technical blog of the Epiverse-TRACE project, where we share opinions and investigations in R package development, or scientific software development more generally

    epiverse-trace/epiverse-trace.github.io’s past year of commit activity
    R 3 3 12 (1 issue needs help) 1 Updated Feb 19, 2025
  • Severity_methods_assessment Public

    Assessment of severity estimation methods during an infectious disease outbreak

    epiverse-trace/Severity_methods_assessment’s past year of commit activity
    R 0 GPL-2.0 0 0 1 Updated Feb 19, 2025
  • epidemics Public

    A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

    epiverse-trace/epidemics’s past year of commit activity
    R 8 4 19 (1 issue needs help) 3 Updated Feb 19, 2025
  • episoap Public

    [Not published - under active development] A Store of Outbreak Analytics Pipelines Provided as Rmarkdown Report Templates

    epiverse-trace/episoap’s past year of commit activity
    R 5 2 31 (2 issues need help) 2 Updated Feb 19, 2025
  • etdashboard Public

    Developer dashboard for a universe overview of Epiverse-TRACE packages

    epiverse-trace/etdashboard’s past year of commit activity
    R 1 0 1 0 Updated Feb 19, 2025
  • etstats Public
    epiverse-trace/etstats’s past year of commit activity
    R 1 CC0-1.0 0 2 0 Updated Feb 18, 2025
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