- September 26: Some reorganization to use cmdstanr, compile models only once, and save just samples instead of the full stan model in the hopes that this will resolve the issues I had with tar_make_future slowing to near 0 after some hours of running
- TO DO: Summary plots currently only dependent on a single coefficient that will vary among runs, but this won’t be how parameter exploration will actually work. Need to work on summary and plotting across a variety of parameters
- Show under coverage of two-step cluster + regression
- Illustrate potential of Bayesian clustering models that simultaneously consider covariates that affect grouping and values within those groups
data/
contains data (empirical and/or saved simulated)R/
contains functions used in this analysis.stan_models/
contains stan model definitionsreports/
contains literate code for R Markdown reports generated in the analysisoutputs/
contains compiled reports and figures.- This project uses the
targets
package to create its analysis pipeline. The steps are defined in the_targets.R
file and the workflow can be executed by runningtargets::tar_make()
.