{bio}[fosscuda/2018b] MRtrix v3.0_RC3 w/ Python 3.6.6

[dithwick]

(created using eb --new-pr)

[dithwick]

Test report by @dithwick
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
login2 - Linux centos 6.10, Intel(R) Xeon(R) CPU E5-2630 v3 @ 2.40GHz, Python 2.6.6
See https://gist.github.com/8c0056418391523fda22f5344fef9e05 for a full test report.

[dithwick]

I'm not sure how to work around this

found 2 variants of 'Qt5' dependency in easyconfigs using '2018b' toolchain generation

issue. It looked like it was working through the foss rather than fosscuda toolchain but regardless, the 5.10.1 version of QT5 won't build on CentOS 6 hence 5.9.8.

Any ideas?

[boegelbot]

Travis test report: 2/2 runs failed - see https://travis-ci.org/easybuilders/easybuild-easyconfigs/builds/547220148

Only showing partial log for 1st failed test suite run 15612.1;
full log at https://travis-ci.org/easybuilders/easybuild-easyconfigs/jobs/547220149

...
FAIL: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/travis/build/easybuilders/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 313, in test_dep_versions_per_toolchain_generation
    self.assertFalse(multi_dep_vars, error_msg)
AssertionError: No multi-variant deps found for '^.*-(?P<tc_gen>201[89][ab]).*\.eb$' easyconfigs:

found 2 variants of 'Qt5' dependency in easyconfigs using '2018b' toolchain generation
* version: 5.10.1; versionsuffix:  as dep for set(['gnuplot-5.2.5-foss-2018b.eb', 'canu-1.8-foss-2018b-Perl-5.28.0.eb', 'ARGoS-3.0.0-beta53-foss-2018b-Lua-5.2.4.eb', 'graph-tool-2.27-foss-2018b-Python-3.6.6.eb', 'SqueezeMeta-0.4.3-foss-2018b-Python-2.7.15.eb', 'OpenFOAM-v1612+-foss-2018b.eb', 'scikit-multilearn-0.2.0-foss-2018b-Python-3.6.6.eb', 'AFNI-18.3.00-foss-2018b-Python-3.6.6.eb', 'Spyder-3.3.2-foss-2018b-Python-3.6.6.eb', 'ParaView-5.4.1-foss-2018b-mpi.eb', 'PyQt5-5.11.3-foss-2018b-Python-3.6.6.eb', 'CGAL-4.11.1-foss-2018b-Python-3.6.6.eb', 'OpenFOAM-v1806-foss-2018b.eb', 'OpenFOAM-v1812-foss-2018b.eb', 'Octave-4.4.1-foss-2018b.eb', 'OpenFOAM-6-foss-2018b.eb', 'CGAL-4.11.1-foss-2018b-Python-2.7.15.eb', 'gnuplot-5.2.6-foss-2018b.eb', 'gnuplot-5.2.6-fosscuda-2018b.eb', 'FMRIprep-1.1.8-foss-2018b-Python-3.6.6.eb', 'OpenFOAM-v1606+-foss-2018b.eb'])
* version: 5.9.8; versionsuffix:  as dep for set(['MRtrix-3.0_RC3-fosscuda-2018b-Python-3.6.6.eb'])


----------------------------------------------------------------------
Ran 11552 tests in 1097.984s

FAILED (failures=1)
ERROR: Not all tests were successful.

• 15612.2 - errored => https://travis-ci.org/easybuilders/easybuild-easyconfigs/jobs/547220150

*bleep, bloop, I'm just a bot (boegelbot v20180813.01)*Please talk to my owner @boegel if you notice you me acting stupid),or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

[migueldiascosta]

@dithwick you can get Qt5 5.10.x to install in CentOS 6 if you manually set check_qtwebengine = False in a local version of the easyconfig

easybuilders/easybuild-easyblocks#1771 will skip that check even if it is set, based on the glibc version

[dithwick]

Completely forgot about this pull-request (sorry). Might as well close it as it's been superseded.