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{bio}[GCCcore/10.20] ack v3.4.0 w/ Perl 5.32.0#7277

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branfosj merged 5 commits intoeasybuilders:developfrom
boegel:20181210212203_new_pr_ack224
Dec 11, 2020
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{bio}[GCCcore/10.20] ack v3.4.0 w/ Perl 5.32.0#7277
branfosj merged 5 commits intoeasybuilders:developfrom
boegel:20181210212203_new_pr_ack224

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@boegel boegel commented Dec 10, 2018

(created using eb --new-pr)
requires #7276 (File::Next)

@boegel boegel added the update label Dec 10, 2018
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boegel commented Dec 10, 2018

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node2668.swalot.os - Linux centos linux 7.5.1804, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/86283d450e3f7e27f50fbe4be8c8f874 for a full test report.

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boegel commented Dec 10, 2018

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node3102.skitty.os - Linux centos linux 7.5.1804, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 2.7.5
See https://gist.github.com/ee932ddb3ec571a671116d16f1c6cabf for a full test report.

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boegel commented Dec 10, 2018

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node2107.delcatty.os - Linux centos linux 7.5.1804, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/36213ffc5c8563aa639c094159a2cdf4 for a full test report.

@boegel boegel added this to the 3.8.0 milestone Dec 10, 2018
@easybuilders easybuilders deleted a comment from boegelbot Dec 11, 2018
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boegel commented Dec 11, 2018

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node3102.skitty.os - Linux centos linux 7.5.1804, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 2.7.5
See https://gist.github.com/3807b0c22d6eaf51d156b87f15c7550d for a full test report.

@boegel boegel changed the title {bio}[GCCcore/7.3.0] ack v2.24 {bio}[GCCcore/7.3.0] ack v2.24 w/ Perl 5.28.0 Dec 11, 2018
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Test report by @bartoldeman
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in this PR)
lg-1r17-n06 - Linux centos 6.6, Intel(R) Xeon(R) CPU E5-2650 0 @ 2.00GHz, Python 2.6.6
See https://gist.github.com/5da0d04037ffdb128fdf339a47c3c1f8 for a full test report.

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Fails on Can't locate File/Next.pm in @INC (you may need to install the File::Next module) (@INC contains: /localscratch/easybuild/build/ack/2.24/GCCcore-7.3.0-Perl-5.28.0/ack-2.24/blib/lib /localscratch/easybuild/build/ack/2.24/GCCcore-7.3.0-Perl-5.28.0/ack-2.24/blib/arch /localscratch/easybuild/software/Perl/5.28.0-GCCcore-7.3.0/lib/perl5/site_perl/5.28.0/x86_64-linux-thread-multi /localscratch/easybuild/software/Perl/5.28.0-GCCcore-7.3.0/lib/perl5/site_perl/5.28.0 /localscratch/easybuild/software/Perl/5.28.0-GCCcore-7.3.0/lib/perl5/5.28.0/x86_64-linux-thread-multi /localscratch/easybuild/software/Perl/5.28.0-GCCcore-7.3.0/lib/perl5/5.28.0) at t/resource-iterator.t line 7.

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ah, ok will do 7276 first :)

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Test report by @bartoldeman
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in this PR)
lg-1r17-n06 - Linux centos 6.6, Intel(R) Xeon(R) CPU E5-2650 0 @ 2.00GHz, Python 2.6.6
See https://gist.github.com/a61fb6051ce0e38277f1fff88139bc26 for a full test report.

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Test report by @bartoldeman
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
lg-1r17-n06 - Linux centos 6.6, Intel(R) Xeon(R) CPU E5-2650 0 @ 2.00GHz, Python 2.6.6
See https://gist.github.com/485856b9d1bd34726a3b0b183ecfa867 for a full test report.

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@boegel it only works ok if i unset BASH_ENV before starting eb.
I'll try to do that in the easyconfig and see if it works there. Note:
BASH_ENV=/software/CentOS-6/tools/lmod/lmod/init/bash so lmod related

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This should work with BASH_ENV set, which it does not for me. I am not sure how to unset it -- we have no pretestopts as far I can see, although disabling tests would do the trick of course.

@boegel boegel modified the milestones: 3.8.0, 3.8.1 Dec 14, 2018
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boegel commented Jan 19, 2019

@bartoldeman Do you know why having BASH_ENV set causes trouble?

@boegel boegel modified the milestones: 3.8.1, 3.x Jan 19, 2019
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Test report by @akesandgren
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in this PR)
b-cn0315.hpc2n.umu.se - Linux ubuntu 16.04, Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, Python 2.7.12
See https://gist.github.com/67b723cece1fc9567b4875fc1767a9d4 for a full test report.

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The problem is probably not related to BASH_ENV, but rather that ack needs File::Next which is not part of that Perl version. It also has a PREREQ_PM that points to more things missing.

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boegel commented Jun 27, 2019

@akesandgren File::Next was added in #7276.

What's the PREREQ_PM thing?

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boegel commented Sep 28, 2019

@akesandgren ping, need more info?

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boegel commented Sep 28, 2019

(re-triggering Travis checks)

@boegel boegel closed this Sep 28, 2019
@boegel boegel reopened this Sep 28, 2019
@boegel boegel removed this from the 3.x milestone Sep 28, 2019
@boegel boegel added this to the 4.x milestone Sep 28, 2019
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Test report by @migueldiascosta
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in this PR)
generoso - Linux centos linux 7.6.1810, Intel(R) Xeon(R) CPU E5-2660 v4 @ 2.00GHz, Python 3.6.8
See https://gist.github.com/ad06c21793db7bc3328762e243d27c57 for a full test report.

@smoors smoors changed the title {bio}[GCCcore/7.3.0] ack v2.24 w/ Perl 5.28.0 {bio}[GCCcore/10.20] ack v3.4.0 w/ Perl 5.32.0 Dec 11, 2020
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smoors commented Dec 11, 2020

@boegelbot please test @ generoso

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smoors commented Dec 11, 2020

Test report by @smoors
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node372.hydra.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz (skylake_avx512), Python 2.7.5
See https://gist.github.com/6fcca1aa8d30a61dbe8f961717daa23e for a full test report.

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@smoors: Request for testing this PR well received on generoso

PR test command 'EB_PR=7277 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_7277 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 12274

Test results coming soon (I hope)...

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- notification for comment with ID 743268314 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
generoso-c1-s-1 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/d49fc81133661af743d2b1815412551b for a full test report.

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boegel commented Dec 11, 2020

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3501.doduo.os - Linux RHEL 8.2, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/59cfb23e12f3d912f45dd745de02d6f9 for a full test report.

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boegel commented Dec 11, 2020

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3409.kirlia.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz (cascadelake), Python 3.6.8
See https://gist.github.com/e22ad33cf6703e68fd32837b87d04420 for a full test report.

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boegel commented Dec 11, 2020

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node2707.swalot.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/c393deac1c39fb7a89f5dbb6dcbd2799 for a full test report.

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boegel commented Dec 11, 2020

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3129.skitty.os - Linux centos linux 7.9.2009, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/9338ebb449559755cfa7594df66838b2 for a full test report.

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Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0211u38b.bear.cluster - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/c320f2105a55b4bfbbb50d8949864820 for a full test report.

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lgtm

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zao commented Dec 11, 2020

Test report by @zao
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
eb-u1604 - Linux ubuntu 16.04, x86_64, Intel(R) Core(TM) i7-8700K CPU @ 3.70GHz, Python 2.7.12
See https://gist.github.com/e3a9ae3fb54dc12f3798904d932b350b for a full test report.

@branfosj branfosj dismissed bartoldeman’s stale review December 11, 2020 19:11

File::Next is the Perl dep now and my successful test has BASH_ENV set

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Going in, thanks @boegel!

@branfosj branfosj merged commit 4fa7a8a into easybuilders:develop Dec 11, 2020
@boegel boegel modified the milestones: 4.x, next release (4.3.3?) Dec 11, 2020
@boegel boegel deleted the 20181210212203_new_pr_ack224 branch December 11, 2020 19:29
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8 participants