{bio}[GCC/14.3.0] FastANI v1.34 by SethosII · Pull Request #25010 · easybuilders/easybuild-easyconfigs

SethosII · 2026-01-06T06:08:34Z

(created using eb --new-pr)

github-actions · 2026-01-06T06:09:04Z

Updated software `FastANI-1.34-GCC-14.3.0.eb`

Diff against FastANI-1.34-GCC-13.3.0.eb

easybuild/easyconfigs/f/FastANI/FastANI-1.34-GCC-13.3.0.eb

diff --git a/easybuild/easyconfigs/f/FastANI/FastANI-1.34-GCC-13.3.0.eb b/easybuild/easyconfigs/f/FastANI/FastANI-1.34-GCC-14.3.0.eb
index c5fbc12a41..731b6a9da1 100644
--- a/easybuild/easyconfigs/f/FastANI/FastANI-1.34-GCC-13.3.0.eb
+++ b/easybuild/easyconfigs/f/FastANI/FastANI-1.34-GCC-14.3.0.eb
@@ -16,9 +16,10 @@ description = """FastANI is developed for fast alignment-free computation of
  genomes. FastANI supports pairwise comparison of both complete and draft
  genome assemblies."""
 
-toolchain = {'name': 'GCC', 'version': '13.3.0'}
+toolchain = {'name': 'GCC', 'version': '14.3.0'}
 
-source_urls = ['https://github.com/ParBLiSS/FastANI/archive']
+github_account = 'ParBLiSS'
+source_urls = [GITHUB_SOURCE]
 sources = ['v%(version)s.zip']
 patches = ['FastANI-1.2-memcpy.patch']
 checksums = [
@@ -26,7 +27,7 @@ checksums = [
     {'FastANI-1.2-memcpy.patch': 'eebcf0b64c31ee360ca79136f644157064ac69747ed13cff70f5c9932c6bb0d5'},
 ]
 
-builddependencies = [('Autotools', '20231222')]
+builddependencies = [('Autotools', '20250527')]
 
 dependencies = [
     ('GSL', '2.8'),

Diff against FastANI-1.34-GCC-13.2.0.eb

easybuild/easyconfigs/f/FastANI/FastANI-1.34-GCC-13.2.0.eb

diff --git a/easybuild/easyconfigs/f/FastANI/FastANI-1.34-GCC-13.2.0.eb b/easybuild/easyconfigs/f/FastANI/FastANI-1.34-GCC-14.3.0.eb
index 73ffad70a8..731b6a9da1 100644
--- a/easybuild/easyconfigs/f/FastANI/FastANI-1.34-GCC-13.2.0.eb
+++ b/easybuild/easyconfigs/f/FastANI/FastANI-1.34-GCC-14.3.0.eb
@@ -16,9 +16,10 @@ description = """FastANI is developed for fast alignment-free computation of
  genomes. FastANI supports pairwise comparison of both complete and draft
  genome assemblies."""
 
-toolchain = {'name': 'GCC', 'version': '13.2.0'}
+toolchain = {'name': 'GCC', 'version': '14.3.0'}
 
-source_urls = ['https://github.com/ParBLiSS/FastANI/archive']
+github_account = 'ParBLiSS'
+source_urls = [GITHUB_SOURCE]
 sources = ['v%(version)s.zip']
 patches = ['FastANI-1.2-memcpy.patch']
 checksums = [
@@ -26,11 +27,11 @@ checksums = [
     {'FastANI-1.2-memcpy.patch': 'eebcf0b64c31ee360ca79136f644157064ac69747ed13cff70f5c9932c6bb0d5'},
 ]
 
-builddependencies = [('Autotools', '20220317')]
+builddependencies = [('Autotools', '20250527')]
 
 dependencies = [
-    ('GSL', '2.7'),
-    ('zlib', '1.2.13'),
+    ('GSL', '2.8'),
+    ('zlib', '1.3.1'),
 ]
 
 preconfigopts = 'autoconf && '

Diff against FastANI-1.34-GCC-12.3.0.eb

easybuild/easyconfigs/f/FastANI/FastANI-1.34-GCC-12.3.0.eb

diff --git a/easybuild/easyconfigs/f/FastANI/FastANI-1.34-GCC-12.3.0.eb b/easybuild/easyconfigs/f/FastANI/FastANI-1.34-GCC-14.3.0.eb
index 53a457447e..731b6a9da1 100644
--- a/easybuild/easyconfigs/f/FastANI/FastANI-1.34-GCC-12.3.0.eb
+++ b/easybuild/easyconfigs/f/FastANI/FastANI-1.34-GCC-14.3.0.eb
@@ -16,9 +16,10 @@ description = """FastANI is developed for fast alignment-free computation of
  genomes. FastANI supports pairwise comparison of both complete and draft
  genome assemblies."""
 
-toolchain = {'name': 'GCC', 'version': '12.3.0'}
+toolchain = {'name': 'GCC', 'version': '14.3.0'}
 
-source_urls = ['https://github.com/ParBLiSS/FastANI/archive']
+github_account = 'ParBLiSS'
+source_urls = [GITHUB_SOURCE]
 sources = ['v%(version)s.zip']
 patches = ['FastANI-1.2-memcpy.patch']
 checksums = [
@@ -26,11 +27,11 @@ checksums = [
     {'FastANI-1.2-memcpy.patch': 'eebcf0b64c31ee360ca79136f644157064ac69747ed13cff70f5c9932c6bb0d5'},
 ]
 
-builddependencies = [('Autotools', '20220317')]
+builddependencies = [('Autotools', '20250527')]
 
 dependencies = [
-    ('GSL', '2.7'),
-    ('zlib', '1.2.13'),
+    ('GSL', '2.8'),
+    ('zlib', '1.3.1'),
 ]
 
 preconfigopts = 'autoconf && '

Thyre · 2026-01-06T14:44:34Z

@boegelbot please test @ jsc-zen3

boegelbot · 2026-01-06T14:50:20Z

@Thyre: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=25010 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_25010 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 9338

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2026-01-06T14:51:16Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (total: 41 secs) (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.7, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.23
See https://gist.github.com/boegelbot/e4002601b15be085ae06e5077f5bcd08 for a full test report.

Micket

lgtm

Micket · 2026-01-07T10:22:45Z

Test report by @Micket
SUCCESS
Build succeeded for 1 out of 1 (total: 19 secs) (1 easyconfigs in total)
vera-icelake-build - Linux Rocky Linux 9.6, x86_64, Intel(R) Xeon(R) Silver 4316 CPU @ 2.30GHz, Python 3.9.21
See https://gist.github.com/Micket/651f210ff42f65e18d1db8a9297378c6 for a full test report.

Thyre · 2026-01-07T12:18:56Z

Test report by @Thyre
FAILED
Build succeeded for 0 out of 1 (total: 13 secs) (1 easyconfigs in total)
jrc0901.jureca - Linux Rocky Linux 9.6, AArch64, ARM UNKNOWN (neoverse_v2), 1 x NVIDIA NVIDIA GH200 480GB, 580.95.05, Python 3.9.21
See https://gist.github.com/Thyre/80f1bbc28a1c66ed7481c5b3d869dbc4 for a full test report.

Micket · 2026-01-07T23:47:28Z

not sure what to make of your build failure @Thyre

Thyre · 2026-01-08T06:24:51Z

not sure what to make of your build failure @Thyre

Will try to reproduce it later (just started a job for this one and forgot).
In the worst case, this is something that can be dealt with in a follow-up PR.

Thyre · 2026-01-08T09:22:19Z

@Micket, see ParBLiSS/FastANI#146. Let us follow up on it, once this issue is resolved.

Thyre · 2026-01-12T10:38:34Z

Test report by @Thyre
SUCCESS
Build succeeded for 1 out of 1 (total: 12 secs) (1 easyconfigs in total)
Linux - Linux Arch Linux UNKNOWN, x86_64, AMD Ryzen 7 7800X3D 8-Core Processor, 1 x AMD Navi 48 [Radeon RX 9070/9070 XT/9070 GRE] (device id: 0x7550, gfx: gfx1201, driver: Linuxversion6.18.4-arch1-1(linux@archlinux)(gcc(GCC)15.2.120260103,GNUld(GNUBinutils)2.45.1)#1SMPPREEMPT_DYNAMICFri,09Jan202619:43:48+0000), 1 x AMD Raphael (device id: 0x164e, gfx: gfx1036, driver: Linuxversion6.18.4-arch1-1(linux@archlinux)(gcc(GCC)15.2.120260103,GNUld(GNUBinutils)2.45.1)#1SMPPREEMPT_DYNAMICFri,09Jan202619:43:48+0000), Python 3.14.2
See https://gist.github.com/Thyre/d919c30e7f88ea5f36b36ecd110b9833 for a full test report.

Thyre · 2026-01-12T10:39:29Z

Test report by @Thyre
SUCCESS
Build succeeded for 1 out of 1 (total: 24 secs) (1 easyconfigs in total)
Framework - Linux Fedora Linux 43, x86_64, AMD Ryzen AI 7 350 w/ Radeon 860M (zen5), 1 x AMD Krackan [Radeon 840M / 860M Graphics] (device id: 0x1114, gfx: gfx1152, driver: Linuxversion6.18.4-200.fc43.x86_64(mockbuild@bc1e0bf216f84bd4841c551523010be9)(gcc(GCC)15.2.120251211(RedHat15.2.1-5),GNUldversion2.45.1-1.fc43)#1SMPPREEMPT_DYNAMICThuJan817:35:49UTC2026), Python 3.14.2
See https://gist.github.com/Thyre/85d8dfeb58604770cedbb1fd30f2f546 for a full test report.

Crivella · 2026-01-12T16:37:28Z

Test report by @Crivella
SUCCESS
Build succeeded for 1 out of 1 (total: 14 secs) (1 easyconfigs in total)
crivella-desktop - Linux Ubuntu 22.04.5 LTS (Jammy Jellyfish), x86_64, 13th Gen Intel(R) Core(TM) i9-13900K (skylake), Python 3.11.14
See https://gist.github.com/Crivella/d35dcad3b3d84c03189770ebe0d927d2 for a full test report.

Crivella

LGTM

Crivella · 2026-01-12T16:38:13Z

Going in, thanks @SethosII!

adding easyconfigs: FastANI-1.34-GCC-14.3.0.eb

861d85b

github-actions bot added 2025b issues & PRs related to 2025b common toolchains update labels Jan 6, 2026

Micket approved these changes Jan 7, 2026

View reviewed changes

Thyre mentioned this pull request Jan 8, 2026

v1.34: Build failure on aarch64 when building from source ParBLiSS/FastANI#146

Open

Thyre added the ready-to-merge label Jan 12, 2026

Crivella approved these changes Jan 12, 2026

View reviewed changes

Crivella added this to the next release (5.2.1?) milestone Jan 12, 2026

Crivella merged commit e237b94 into easybuilders:develop Jan 12, 2026
8 checks passed

SethosII deleted the 20260106070830_new_pr_FastANI134 branch January 13, 2026 09:16

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SethosII commented Jan 6, 2026

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github-actions bot commented Jan 6, 2026

Updated software FastANI-1.34-GCC-14.3.0.eb

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Updated software `FastANI-1.34-GCC-14.3.0.eb`

Thyre commented Jan 8, 2026 •

edited

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