{bio}[GCCcore/13.3.0] fermi-lite v20190320

[verdurin]

(created using eb --new-pr)

[github-actions]

Updated software fermi-lite-20190320-GCCcore-13.3.0.eb

Diff against fermi-lite-20190320-GCCcore-13.2.0.eb

easybuild/easyconfigs/f/fermi-lite/fermi-lite-20190320-GCCcore-13.2.0.eb

diff --git a/easybuild/easyconfigs/f/fermi-lite/fermi-lite-20190320-GCCcore-13.2.0.eb b/easybuild/easyconfigs/f/fermi-lite/fermi-lite-20190320-GCCcore-13.3.0.eb
index 4db29d4cdb..d7984ab619 100644
--- a/easybuild/easyconfigs/f/fermi-lite/fermi-lite-20190320-GCCcore-13.2.0.eb
+++ b/easybuild/easyconfigs/f/fermi-lite/fermi-lite-20190320-GCCcore-13.3.0.eb
@@ -9,7 +9,7 @@ local_commit = 'b499514'
 homepage = 'https://github.com/lh3/fermi-lite'
 description = """Standalone C library for assembling Illumina short reads in small regions."""
 
-toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
 
 github_account = 'lh3'
 source_urls = [GITHUB_SOURCE]
@@ -25,9 +25,9 @@ checksums = [
     '43398559fbb3910d6d3d1a41af3fb16bf8f26bd7cc34176dfc9a068a551c3f50',  # fermi-lite-20190320_build-shared-lib.patch
 ]
 
-builddependencies = [('binutils', '2.40')]
+builddependencies = [('binutils', '2.42')]
 
-dependencies = [('zlib', '1.2.13')]
+dependencies = [('zlib', '1.3.1')]
 
 prebuildopts = 'CFLAGS="$CFLAGS -fcommon"'
 

Diff against fermi-lite-20190320-GCCcore-12.3.0.eb

easybuild/easyconfigs/f/fermi-lite/fermi-lite-20190320-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/f/fermi-lite/fermi-lite-20190320-GCCcore-12.3.0.eb b/easybuild/easyconfigs/f/fermi-lite/fermi-lite-20190320-GCCcore-13.3.0.eb
index 741fbc4f06..d7984ab619 100644
--- a/easybuild/easyconfigs/f/fermi-lite/fermi-lite-20190320-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/f/fermi-lite/fermi-lite-20190320-GCCcore-13.3.0.eb
@@ -9,7 +9,7 @@ local_commit = 'b499514'
 homepage = 'https://github.com/lh3/fermi-lite'
 description = """Standalone C library for assembling Illumina short reads in small regions."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
 
 github_account = 'lh3'
 source_urls = [GITHUB_SOURCE]
@@ -25,13 +25,13 @@ checksums = [
     '43398559fbb3910d6d3d1a41af3fb16bf8f26bd7cc34176dfc9a068a551c3f50',  # fermi-lite-20190320_build-shared-lib.patch
 ]
 
-builddependencies = [('binutils', '2.40')]
+builddependencies = [('binutils', '2.42')]
 
-dependencies = [('zlib', '1.2.13')]
+dependencies = [('zlib', '1.3.1')]
 
 prebuildopts = 'CFLAGS="$CFLAGS -fcommon"'
 
-maxparallel = 1
+max_parallel = 1
 
 files_to_copy = [
     (['fml-asm'], 'bin'),

Diff against fermi-lite-20190320-GCCcore-10.3.0.eb

easybuild/easyconfigs/f/fermi-lite/fermi-lite-20190320-GCCcore-10.3.0.eb

diff --git a/easybuild/easyconfigs/f/fermi-lite/fermi-lite-20190320-GCCcore-10.3.0.eb b/easybuild/easyconfigs/f/fermi-lite/fermi-lite-20190320-GCCcore-13.3.0.eb
index 6daf5a6803..d7984ab619 100644
--- a/easybuild/easyconfigs/f/fermi-lite/fermi-lite-20190320-GCCcore-10.3.0.eb
+++ b/easybuild/easyconfigs/f/fermi-lite/fermi-lite-20190320-GCCcore-13.3.0.eb
@@ -9,7 +9,7 @@ local_commit = 'b499514'
 homepage = 'https://github.com/lh3/fermi-lite'
 description = """Standalone C library for assembling Illumina short reads in small regions."""
 
-toolchain = {'name': 'GCCcore', 'version': '10.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
 
 github_account = 'lh3'
 source_urls = [GITHUB_SOURCE]
@@ -25,12 +25,14 @@ checksums = [
     '43398559fbb3910d6d3d1a41af3fb16bf8f26bd7cc34176dfc9a068a551c3f50',  # fermi-lite-20190320_build-shared-lib.patch
 ]
 
-builddependencies = [('binutils', '2.36.1')]
+builddependencies = [('binutils', '2.42')]
 
-dependencies = [('zlib', '1.2.11')]
+dependencies = [('zlib', '1.3.1')]
 
 prebuildopts = 'CFLAGS="$CFLAGS -fcommon"'
 
+max_parallel = 1
+
 files_to_copy = [
     (['fml-asm'], 'bin'),
     (['*.a', '*.%s*' % SHLIB_EXT], 'lib'),

[verdurin]

Test report by @verdurin
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
easybuild-el8.cloud.in.bmrc.ox.ac.uk - Linux Rocky Linux 8.10 (Green Obsidian), x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.11.13
See https://gist.github.com/verdurin/73ed77c0903506ec33e1fd4e964ddcda for a full test report.

[jfgrimm]

Test report by @jfgrimm
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node041.viking2.yor.alces.network - Linux Rocky Linux 8.10, x86_64, AMD EPYC 7643 48-Core Processor, Python 3.6.8
See https://gist.github.com/jfgrimm/c54f79ea9b64e6999eff5df7b14ef5fb for a full test report.

[jfgrimm]

Going in, thanks @verdurin!

[jfgrimm]

@boegelbot: please test @ jsc-zen3

[boegelbot]

@jfgrimm: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=24563 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_24563 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 8770

Test results coming soon (I hope)...

Details

- notification for comment with ID 3532914357 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (total: 15 secs) (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/87830d30d77bd045ada593dec9ea317f for a full test report.

edit (by @boegel): was failing because of framework bug, fixed in:

• only retain runtime dependencies of toolchain in Toolchain instance easybuild-framework#5048

[boegel]

@boegelbot: please test @ jsc-zen3

[boegelbot]

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=24563 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_24563 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 8777

Test results coming soon (I hope)...

Details

- notification for comment with ID 3534771058 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (total: 35 secs) (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/fa56cad10f2f6911ad6a854a2aa0bc12 for a full test report.