{vis}[GCCcore/14.3.0] graphviz-python v0.21, Graphviz v13.1.2 + use non-minimal Graphviz as dependency for MUST by pavelToman · Pull Request #24561 · easybuilders/easybuild-easyconfigs

pavelToman · 2025-11-14T10:34:51Z

(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#573

…13.1.2-GCCcore-14.3.0.eb

github-actions · 2025-11-14T10:35:21Z

Updated software `Graphviz-13.1.2-GCCcore-14.3.0.eb`

Diff against Graphviz-13.1.2-GCCcore-14.2.0-minimal.eb

easybuild/easyconfigs/g/Graphviz/Graphviz-13.1.2-GCCcore-14.2.0-minimal.eb

diff --git a/easybuild/easyconfigs/g/Graphviz/Graphviz-13.1.2-GCCcore-14.2.0-minimal.eb b/easybuild/easyconfigs/g/Graphviz/Graphviz-13.1.2-GCCcore-14.3.0.eb
index d40caf91ef..55d0c1570f 100644
--- a/easybuild/easyconfigs/g/Graphviz/Graphviz-13.1.2-GCCcore-14.2.0-minimal.eb
+++ b/easybuild/easyconfigs/g/Graphviz/Graphviz-13.1.2-GCCcore-14.3.0.eb
@@ -2,7 +2,6 @@ easyblock = 'ConfigureMake'
 
 name = 'Graphviz'
 version = '13.1.2'
-versionsuffix = '-minimal'
 local_pyver_major = '3'
 
 homepage = 'https://www.graphviz.org/'
@@ -12,7 +11,7 @@ description = """Graphviz is open source graph visualization software. Graph vis
  bioinformatics,  software engineering, database and web design, machine learning,
  and in visual interfaces for other technical domains."""
 
-toolchain = {'name': 'GCCcore', 'version': '14.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '14.3.0'}
 
 source_urls = ['https://gitlab.com/graphviz/graphviz/-/archive/%(version)s']
 sources = [SOURCELOWER_TAR_GZ]
@@ -23,53 +22,63 @@ checksums = [
 ]
 
 builddependencies = [
-    ('Autotools', '20240712'),
-    ('binutils', '2.42'),
+    ('Autotools', '20250527'),
+    ('binutils', '2.44'),
     ('Bison', '3.8.2'),
     ('flex', '2.6.4'),
     ('SWIG', '4.3.1'),
-    ('pkgconf', '2.3.0'),
+    ('pkgconf', '2.4.3'),
     ('groff', '1.23.0'),
 ]
 
 dependencies = [
-    ('Python', '3.13.1'),
+    ('Java', '21', '', SYSTEM),
+    ('Python', '3.13.5'),
+    ('FriBidi', '1.0.16'),
+    ('Gdk-Pixbuf', '2.42.12'),
+    ('Ghostscript', '10.05.1'),
+    ('GTS', '0.7.6'),
     ('libgd', '2.3.3'),
+    ('Pango', '1.57.0'),
+    ('Perl', '5.40.2'),
+    ('Qt6', '6.9.3'),
+    ('Tcl', '9.0.1'),
     ('zlib', '1.3.1'),
     ('bzip2', '1.0.8'),
-    ('libjpeg-turbo', '3.1.0'),
-    ('expat', '2.6.4'),
+    ('libjpeg-turbo', '3.1.1'),
+    ('expat', '2.7.1'),
 ]
-
 preconfigopts = './autogen.sh NOCONFIG && '
 
 _copts = [
-    f'--enable-python{local_pyver_major}=yes',
+    '--enable-python%s=yes' % local_pyver_major,
     '--enable-guile=no --enable-lua=no --enable-ocaml=no',
     '--enable-r=no --enable-ruby=no --enable-php=no',
-    '--enable-java=no',
-    '--enable-ghostscript=no',
-    # Disable GUI-related options
-    '--without-x --without-qt --without-gtk --without-glut --enable-tcl=no',
     # Use ltdl from libtool in EB
     '--enable-ltdl --without-included-ltdl --disable-ltdl-install',
     '--with-ltdl-include=$EBROOTLIBTOOL/include --with-ltdl-lib=$EBROOTLIBTOOL/lib',
+    # Override the hardcoded paths to Java libraries
+    '--with-javaincludedir=$JAVA_HOME/include --with-javaincludedir=$JAVA_HOME/include/linux',
+    '--with-javalibdir=$JAVA_HOME/lib',
     '--with-expatincludedir=$EBROOTEXPAT/include --with-expatlibdir=$EBROOTEXPAT/lib',
     '--with-zincludedir=$EBROOTZLIB/include --with-zlibdir=$EBROOTZLIB/lib',
 ]
 
 configopts = ' '.join(_copts)
 
+prebuildopts = 'qmake -o cmd/gvedit/qMakefile cmd/gvedit/gvedit.pro && '
+
 postinstallcmds = ['%(installdir)s/bin/dot -c']  # Writes plugin configuration
 
 sanity_check_paths = {
     'files': ['bin/%s' % x for x in ['acyclic', 'bcomps', 'ccomps', 'cluster', 'diffimg', 'dijkstra', 'dot',
                                      'dot_builtins', 'edgepaint', 'gc', 'gml2gv', 'graphml2gv', 'gv2gml',
-                                     'gvcolor', 'gvgen', 'gvmap', 'gvmap.sh', 'gvpack', 'gvpr', 'gxl2gv',
-                                     'neato', 'mm2gv', 'nop', 'prune', 'sccmap', 'tred', 'unflatten']] +
+                                     'gvcolor', 'gvedit', 'gvgen', 'gvmap', 'gvmap.sh', 'gvpack', 'gvpr', 'gxl2gv',
+                                     'neato', 'mm2gv', 'nop', 'prune', 'sccmap', 'tred', 'unflatten',
+                                     'vimdot']] +
              ['lib/%s.%s' % (x, SHLIB_EXT) for x in ['libcdt', 'libcgraph', 'libgvc', 'libgvpr',
                                                      'libpathplan', 'libxdot']],
-    'dirs': ['include', 'lib/graphviz', 'lib/graphviz/python%s' % local_pyver_major,
+    'dirs': ['include', 'lib/graphviz', 'lib/graphviz/java', 'lib/graphviz/python%s' % local_pyver_major,
              'lib/pkgconfig', 'share']
 }
 
@@ -80,7 +89,10 @@ sanity_check_commands = [
 ]
 
 modextrapaths = {
+    'CLASSPATH': 'lib/graphviz/java',
+    'LD_LIBRARY_PATH': 'lib/graphviz/java',
     'PYTHONPATH': 'lib/graphviz/python%s' % local_pyver_major,
+    'TCLLIBPATH': {'paths': 'lib/graphviz/tcl', 'delimiter': ' '},
 }
 
 moduleclass = 'vis'

Diff against Graphviz-13.1.2-GCCcore-14.3.0-minimal.eb

easybuild/easyconfigs/g/Graphviz/Graphviz-13.1.2-GCCcore-14.3.0-minimal.eb

diff --git a/easybuild/easyconfigs/g/Graphviz/Graphviz-13.1.2-GCCcore-14.3.0-minimal.eb b/easybuild/easyconfigs/g/Graphviz/Graphviz-13.1.2-GCCcore-14.3.0.eb
index d393e396ee..55d0c1570f 100644
--- a/easybuild/easyconfigs/g/Graphviz/Graphviz-13.1.2-GCCcore-14.3.0-minimal.eb
+++ b/easybuild/easyconfigs/g/Graphviz/Graphviz-13.1.2-GCCcore-14.3.0.eb
@@ -2,7 +2,6 @@ easyblock = 'ConfigureMake'
 
 name = 'Graphviz'
 version = '13.1.2'
-versionsuffix = '-minimal'
 local_pyver_major = '3'
 
 homepage = 'https://www.graphviz.org/'
@@ -33,43 +32,53 @@ builddependencies = [
 ]
 
 dependencies = [
+    ('Java', '21', '', SYSTEM),
     ('Python', '3.13.5'),
+    ('FriBidi', '1.0.16'),
+    ('Gdk-Pixbuf', '2.42.12'),
+    ('Ghostscript', '10.05.1'),
+    ('GTS', '0.7.6'),
     ('libgd', '2.3.3'),
+    ('Pango', '1.57.0'),
+    ('Perl', '5.40.2'),
+    ('Qt6', '6.9.3'),
+    ('Tcl', '9.0.1'),
     ('zlib', '1.3.1'),
     ('bzip2', '1.0.8'),
     ('libjpeg-turbo', '3.1.1'),
     ('expat', '2.7.1'),
 ]
-
 preconfigopts = './autogen.sh NOCONFIG && '
 
 _copts = [
-    f'--enable-python{local_pyver_major}=yes',
+    '--enable-python%s=yes' % local_pyver_major,
     '--enable-guile=no --enable-lua=no --enable-ocaml=no',
     '--enable-r=no --enable-ruby=no --enable-php=no',
-    '--enable-java=no',
-    '--enable-ghostscript=no',
-    # Disable GUI-related options
-    '--without-x --without-qt --without-gtk --without-glut --enable-tcl=no',
     # Use ltdl from libtool in EB
     '--enable-ltdl --without-included-ltdl --disable-ltdl-install',
     '--with-ltdl-include=$EBROOTLIBTOOL/include --with-ltdl-lib=$EBROOTLIBTOOL/lib',
+    # Override the hardcoded paths to Java libraries
+    '--with-javaincludedir=$JAVA_HOME/include --with-javaincludedir=$JAVA_HOME/include/linux',
+    '--with-javalibdir=$JAVA_HOME/lib',
     '--with-expatincludedir=$EBROOTEXPAT/include --with-expatlibdir=$EBROOTEXPAT/lib',
     '--with-zincludedir=$EBROOTZLIB/include --with-zlibdir=$EBROOTZLIB/lib',
 ]
 
 configopts = ' '.join(_copts)
 
+prebuildopts = 'qmake -o cmd/gvedit/qMakefile cmd/gvedit/gvedit.pro && '
+
 postinstallcmds = ['%(installdir)s/bin/dot -c']  # Writes plugin configuration
 
 sanity_check_paths = {
     'files': ['bin/%s' % x for x in ['acyclic', 'bcomps', 'ccomps', 'cluster', 'diffimg', 'dijkstra', 'dot',
                                      'dot_builtins', 'edgepaint', 'gc', 'gml2gv', 'graphml2gv', 'gv2gml',
-                                     'gvcolor', 'gvgen', 'gvmap', 'gvmap.sh', 'gvpack', 'gvpr', 'gxl2gv',
-                                     'neato', 'mm2gv', 'nop', 'prune', 'sccmap', 'tred', 'unflatten']] +
+                                     'gvcolor', 'gvedit', 'gvgen', 'gvmap', 'gvmap.sh', 'gvpack', 'gvpr', 'gxl2gv',
+                                     'neato', 'mm2gv', 'nop', 'prune', 'sccmap', 'tred', 'unflatten',
+                                     'vimdot']] +
              ['lib/%s.%s' % (x, SHLIB_EXT) for x in ['libcdt', 'libcgraph', 'libgvc', 'libgvpr',
                                                      'libpathplan', 'libxdot']],
-    'dirs': ['include', 'lib/graphviz', 'lib/graphviz/python%s' % local_pyver_major,
+    'dirs': ['include', 'lib/graphviz', 'lib/graphviz/java', 'lib/graphviz/python%s' % local_pyver_major,
              'lib/pkgconfig', 'share']
 }
 
@@ -80,7 +89,10 @@ sanity_check_commands = [
 ]
 
 modextrapaths = {
+    'CLASSPATH': 'lib/graphviz/java',
+    'LD_LIBRARY_PATH': 'lib/graphviz/java',
     'PYTHONPATH': 'lib/graphviz/python%s' % local_pyver_major,
+    'TCLLIBPATH': {'paths': 'lib/graphviz/tcl', 'delimiter': ' '},
 }
 
 moduleclass = 'vis'

Diff against Graphviz-12.2.0-GCCcore-13.3.0-minimal.eb

easybuild/easyconfigs/g/Graphviz/Graphviz-12.2.0-GCCcore-13.3.0-minimal.eb

diff --git a/easybuild/easyconfigs/g/Graphviz/Graphviz-12.2.0-GCCcore-13.3.0-minimal.eb b/easybuild/easyconfigs/g/Graphviz/Graphviz-13.1.2-GCCcore-14.3.0.eb
index 61aca4c6bf..55d0c1570f 100644
--- a/easybuild/easyconfigs/g/Graphviz/Graphviz-12.2.0-GCCcore-13.3.0-minimal.eb
+++ b/easybuild/easyconfigs/g/Graphviz/Graphviz-13.1.2-GCCcore-14.3.0.eb
@@ -1,8 +1,7 @@
 easyblock = 'ConfigureMake'
 
 name = 'Graphviz'
-version = '12.2.0'
-versionsuffix = '-minimal'
+version = '13.1.2'
 local_pyver_major = '3'
 
 homepage = 'https://www.graphviz.org/'
@@ -12,65 +11,74 @@ description = """Graphviz is open source graph visualization software. Graph vis
  bioinformatics,  software engineering, database and web design, machine learning,
  and in visual interfaces for other technical domains."""
 
-toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '14.3.0'}
 
 source_urls = ['https://gitlab.com/graphviz/graphviz/-/archive/%(version)s']
-patches = ['%(name)s-8.1.0_skip-install-data-hook.patch']
 sources = [SOURCELOWER_TAR_GZ]
-
+patches = ['%(name)s-8.1.0_skip-install-data-hook.patch']
 checksums = [
-    {'graphviz-12.2.0.tar.gz': '0063e501fa4642b55f4daf82820b2778bfb7dafa651a862ae5c9810efb8e2311'},
+    {'graphviz-13.1.2.tar.gz': '0e79b8402e8ea13f05c0fc0e30604f1d0731cd3f60f85850cedac7e0ee420ef8'},
     {'Graphviz-8.1.0_skip-install-data-hook.patch': '834666f1b5a8eff35f30899419e322739d71a2936408b27c8ffb4423a99a38e1'},
 ]
 
 builddependencies = [
-    ('Autotools', '20231222'),
-    ('binutils', '2.42'),
+    ('Autotools', '20250527'),
+    ('binutils', '2.44'),
     ('Bison', '3.8.2'),
     ('flex', '2.6.4'),
-    ('SWIG', '4.2.1'),
-    ('pkgconf', '2.2.0'),
+    ('SWIG', '4.3.1'),
+    ('pkgconf', '2.4.3'),
     ('groff', '1.23.0'),
 ]
 
 dependencies = [
-    ('Python', '3.12.3'),
+    ('Java', '21', '', SYSTEM),
+    ('Python', '3.13.5'),
+    ('FriBidi', '1.0.16'),
+    ('Gdk-Pixbuf', '2.42.12'),
+    ('Ghostscript', '10.05.1'),
+    ('GTS', '0.7.6'),
     ('libgd', '2.3.3'),
+    ('Pango', '1.57.0'),
+    ('Perl', '5.40.2'),
+    ('Qt6', '6.9.3'),
+    ('Tcl', '9.0.1'),
     ('zlib', '1.3.1'),
     ('bzip2', '1.0.8'),
-    ('libjpeg-turbo', '3.0.1'),
-    ('expat', '2.6.2'),
+    ('libjpeg-turbo', '3.1.1'),
+    ('expat', '2.7.1'),
 ]
-
 preconfigopts = './autogen.sh NOCONFIG && '
 
 _copts = [
     '--enable-python%s=yes' % local_pyver_major,
     '--enable-guile=no --enable-lua=no --enable-ocaml=no',
     '--enable-r=no --enable-ruby=no --enable-php=no',
-    '--enable-java=no',
-    '--enable-ghostscript=no',
-    # Disable GUI-related options
-    '--without-x --without-qt --without-gtk --without-glut --enable-tcl=no',
     # Use ltdl from libtool in EB
     '--enable-ltdl --without-included-ltdl --disable-ltdl-install',
     '--with-ltdl-include=$EBROOTLIBTOOL/include --with-ltdl-lib=$EBROOTLIBTOOL/lib',
+    # Override the hardcoded paths to Java libraries
+    '--with-javaincludedir=$JAVA_HOME/include --with-javaincludedir=$JAVA_HOME/include/linux',
+    '--with-javalibdir=$JAVA_HOME/lib',
     '--with-expatincludedir=$EBROOTEXPAT/include --with-expatlibdir=$EBROOTEXPAT/lib',
     '--with-zincludedir=$EBROOTZLIB/include --with-zlibdir=$EBROOTZLIB/lib',
 ]
 
 configopts = ' '.join(_copts)
 
+prebuildopts = 'qmake -o cmd/gvedit/qMakefile cmd/gvedit/gvedit.pro && '
+
 postinstallcmds = ['%(installdir)s/bin/dot -c']  # Writes plugin configuration
 
 sanity_check_paths = {
     'files': ['bin/%s' % x for x in ['acyclic', 'bcomps', 'ccomps', 'cluster', 'diffimg', 'dijkstra', 'dot',
                                      'dot_builtins', 'edgepaint', 'gc', 'gml2gv', 'graphml2gv', 'gv2gml',
-                                     'gvcolor', 'gvgen', 'gvmap', 'gvmap.sh', 'gvpack', 'gvpr', 'gxl2gv',
-                                     'neato', 'mm2gv', 'nop', 'prune', 'sccmap', 'tred', 'unflatten']] +
+                                     'gvcolor', 'gvedit', 'gvgen', 'gvmap', 'gvmap.sh', 'gvpack', 'gvpr', 'gxl2gv',
+                                     'neato', 'mm2gv', 'nop', 'prune', 'sccmap', 'tred', 'unflatten',
+                                     'vimdot']] +
              ['lib/%s.%s' % (x, SHLIB_EXT) for x in ['libcdt', 'libcgraph', 'libgvc', 'libgvpr',
                                                      'libpathplan', 'libxdot']],
-    'dirs': ['include', 'lib/graphviz', 'lib/graphviz/python%s' % local_pyver_major,
+    'dirs': ['include', 'lib/graphviz', 'lib/graphviz/java', 'lib/graphviz/python%s' % local_pyver_major,
              'lib/pkgconfig', 'share']
 }
 
@@ -81,7 +89,10 @@ sanity_check_commands = [
 ]
 
 modextrapaths = {
+    'CLASSPATH': 'lib/graphviz/java',
+    'LD_LIBRARY_PATH': 'lib/graphviz/java',
     'PYTHONPATH': 'lib/graphviz/python%s' % local_pyver_major,
+    'TCLLIBPATH': {'paths': 'lib/graphviz/tcl', 'delimiter': ' '},
 }
 
 moduleclass = 'vis'

Updated software `graphviz-python-0.21-GCCcore-14.3.0.eb`

Diff against graphviz-python-0.20.1-GCCcore-13.2.0.eb

easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.20.1-GCCcore-13.2.0.eb

diff --git a/easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.20.1-GCCcore-13.2.0.eb b/easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.21-GCCcore-14.3.0.eb
index a01a29ff83..517062921c 100644
--- a/easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.20.1-GCCcore-13.2.0.eb
+++ b/easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.21-GCCcore-14.3.0.eb
@@ -1,26 +1,24 @@
-easyblock = 'PythonPackage'
+easyblock = 'PythonBundle'
 
 name = 'graphviz-python'
-version = '0.20.1'
+version = '0.21'
 
 homepage = 'https://pypi.python.org/pypi/graphviz'
 description = """Simple Python interface for Graphviz"""
 
-toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '14.3.0'}
 
-source_urls = ['https://pypi.python.org/packages/source/g/graphviz']
-sources = ['graphviz-%(version)s.zip']
-checksums = ['8c58f14adaa3b947daf26c19bc1e98c4e0702cdc31cf99153e6f06904d492bf8']
-
-builddependencies = [
-    ('binutils', '2.40'),
-]
+builddependencies = [('binutils', '2.44')]
 
 dependencies = [
-    ('Python', '3.11.5'),
-    ('Graphviz', '9.0.0'),
+    ('Python', '3.13.5'),
+    ('Graphviz', '13.1.2'),
 ]
 
-options = {'modulename': 'graphviz'}
+exts_list = [
+    ('graphviz', version, {
+        'checksums': ['20743e7183be82aaaa8ad6c93f8893c923bd6658a04c32ee115edb3c8a835f78'],
+    }),
+]
 
 moduleclass = 'vis'

Diff against graphviz-python-0.20.1-GCCcore-12.3.0.eb

easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.20.1-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.20.1-GCCcore-12.3.0.eb b/easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.21-GCCcore-14.3.0.eb
index a0ad85fe96..517062921c 100644
--- a/easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.20.1-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.21-GCCcore-14.3.0.eb
@@ -1,26 +1,24 @@
-easyblock = 'PythonPackage'
+easyblock = 'PythonBundle'
 
 name = 'graphviz-python'
-version = '0.20.1'
+version = '0.21'
 
 homepage = 'https://pypi.python.org/pypi/graphviz'
 description = """Simple Python interface for Graphviz"""
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '14.3.0'}
 
-source_urls = ['https://pypi.python.org/packages/source/g/graphviz']
-sources = ['graphviz-%(version)s.zip']
-checksums = ['8c58f14adaa3b947daf26c19bc1e98c4e0702cdc31cf99153e6f06904d492bf8']
-
-builddependencies = [
-    ('binutils', '2.40'),
-]
+builddependencies = [('binutils', '2.44')]
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('Graphviz', '8.1.0'),
+    ('Python', '3.13.5'),
+    ('Graphviz', '13.1.2'),
 ]
 
-options = {'modulename': 'graphviz'}
+exts_list = [
+    ('graphviz', version, {
+        'checksums': ['20743e7183be82aaaa8ad6c93f8893c923bd6658a04c32ee115edb3c8a835f78'],
+    }),
+]
 
 moduleclass = 'vis'

Diff against graphviz-python-0.20.1-GCCcore-11.3.0.eb

easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.20.1-GCCcore-11.3.0.eb

diff --git a/easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.20.1-GCCcore-11.3.0.eb b/easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.21-GCCcore-14.3.0.eb
index 4724301a0e..517062921c 100644
--- a/easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.20.1-GCCcore-11.3.0.eb
+++ b/easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.21-GCCcore-14.3.0.eb
@@ -1,26 +1,24 @@
-easyblock = 'PythonPackage'
+easyblock = 'PythonBundle'
 
 name = 'graphviz-python'
-version = '0.20.1'
+version = '0.21'
 
 homepage = 'https://pypi.python.org/pypi/graphviz'
 description = """Simple Python interface for Graphviz"""
 
-toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '14.3.0'}
 
-source_urls = ['https://pypi.python.org/packages/source/g/graphviz']
-sources = ['graphviz-%(version)s.zip']
-checksums = ['8c58f14adaa3b947daf26c19bc1e98c4e0702cdc31cf99153e6f06904d492bf8']
-
-builddependencies = [
-    ('binutils', '2.38'),
-]
+builddependencies = [('binutils', '2.44')]
 
 dependencies = [
-    ('Python', '3.10.4'),
-    ('Graphviz', '5.0.0'),
+    ('Python', '3.13.5'),
+    ('Graphviz', '13.1.2'),
 ]
 
-options = {'modulename': 'graphviz'}
+exts_list = [
+    ('graphviz', version, {
+        'checksums': ['20743e7183be82aaaa8ad6c93f8893c923bd6658a04c32ee115edb3c8a835f78'],
+    }),
+]
 
 moduleclass = 'vis'

Thyre

I propose to move the MUST EasyConfigs to use the full GraphViz with this PR, so that only one version is used.

easybuild/easyconfigs/g/Graphviz/Graphviz-13.1.2-GCCcore-14.3.0.eb

…0.eb Co-authored-by: Jan André Reuter <jan.andre.reuter@hotmail.de>

pavelToman · 2025-11-14T15:17:46Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-11-14T15:20:09Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=24561 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_24561 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 8774

Test results coming soon (I hope)...

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Message to humans: this is just bookkeeping information for me,
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boegelbot · 2025-11-14T16:30:51Z

Test report by @boegelbot
FAILED
Build succeeded for 4 out of 5 (total: 1 hour 10 mins 22 secs) (5 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/619b229424576cc7cb797e06d687f80b for a full test report.

pavelToman · 2025-11-14T16:38:39Z

Test report by @boegelbot FAILED Build succeeded for 4 out of 5 (total: 1 hour 10 mins 22 secs) (5 easyconfigs in total) jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21 See https://gist.github.com/boegelbot/619b229424576cc7cb797e06d687f80b for a full test report.

Error:
get_software_root software root for M4 was not found in environment (at easybuild/easybuild-framework/easybuild/tools/toolchain/toolchain.py:443 in _get_software_root)

The very same as here: #24540 (comment)
Either on JSC.

@Thyre, do you have an idea what is going on?

Thyre · 2025-11-14T17:52:15Z

Error:

get_software_root software root for M4 was not found in environment (at easybuild/easybuild-framework/easybuild/tools/toolchain/toolchain.py:443 in _get_software_root)

The very same as here: #24540 (comment)

Either on JSC.

@Thyre, do you have an idea what is going on?

I'm guessing that something broke the M4 module? I can check how the contents of the folder look like, but cannot guarantee when.

pavelToman · 2025-11-14T18:10:58Z

Test report by @pavelToman
SUCCESS
Build succeeded for 8 out of 8 (total: 1 hour 10 mins 8 secs) (5 easyconfigs in total)
node4201.shinx.os - Linux RHEL 9.6, x86_64, AMD EPYC 9654 96-Core Processor, Python 3.9.21
See https://gist.github.com/pavelToman/9ffd48909ba8c3426035ec4c5fc52061 for a full test report.

pavelToman · 2025-11-14T18:47:22Z

Test report by @pavelToman
SUCCESS
Build succeeded for 5 out of 5 (total: 1 hour 4 mins 39 secs) (5 easyconfigs in total)
node4003.donphan.os - Linux RHEL 9.6, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 580.95.05, Python 3.9.21
See https://gist.github.com/pavelToman/ffcda243be40fd982c983b31d18cb1a6 for a full test report.

Thyre · 2025-11-14T19:10:11Z

@pavelToman, if I understand correctly, this should fix it: easybuilders/easybuild-framework#5048

pavelToman · 2025-11-14T21:53:52Z

Test report by @pavelToman
SUCCESS
Build succeeded for 13 out of 13 (total: 1 hour 5 mins 24 secs) (5 easyconfigs in total)
node4307.litleo.os - Linux RHEL 9.6, x86_64, AMD EPYC 9454P 48-Core Processor, Python 3.9.21
See https://gist.github.com/pavelToman/670e1466c7e0630704bbcda41f1d5bfd for a full test report.

Thyre · 2025-11-15T06:26:44Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-11-15T06:30:09Z

@Thyre: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=24561 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_24561 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 8778

Test results coming soon (I hope)...

Details

- notification for comment with ID 3536095876 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-11-15T07:40:27Z

Test report by @boegelbot
SUCCESS
Build succeeded for 5 out of 5 (total: 1 hour 10 mins 1 secs) (5 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/95890d976118dfbff746c863ea933d15 for a full test report.

Micket

lgtm

Micket · 2025-11-18T01:09:54Z

Test report by @Micket
SUCCESS
Build succeeded for 6 out of 6 (5 easyconfigs in total)
vera-icelake-build - Linux Rocky Linux 9.6, x86_64, Intel(R) Xeon(R) Silver 4316 CPU @ 2.30GHz, Python 3.9.21
See https://gist.github.com/Micket/33c4246f58762b934ae43880dbf086d0 for a full test report.

adding easyconfigs: graphviz-python-0.21-GCCcore-14.3.0.eb, Graphviz-…

4873339

…13.1.2-GCCcore-14.3.0.eb

pavelToman added the update label Nov 14, 2025

github-actions bot added the 2025b issues & PRs related to 2025b common toolchains label Nov 14, 2025

Thyre suggested changes Nov 14, 2025

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easybuild/easyconfigs/g/Graphviz/Graphviz-13.1.2-GCCcore-14.3.0.eb Outdated Show resolved Hide resolved

pavelToman and others added 4 commits November 14, 2025 12:13

Update easybuild/easyconfigs/g/Graphviz/Graphviz-13.1.2-GCCcore-14.3.…

a91e902

…0.eb Co-authored-by: Jan André Reuter <jan.andre.reuter@hotmail.de>

Update MUST-1.11.0-iimpi-2025b.eb - use full Graphviz

c346900

Update MUST-1.11.1-iimpi-2025b.eb - use full Graphviz

8b44a3d

Update MUST-1.11.2-iimpi-2025b.eb - use full Graphviz

5b06439

pavelToman mentioned this pull request Nov 14, 2025

{chem,tools}[foss/2025b] pyiron-gpl v0.0.5-20251021, pyiron v0.5.2-20251013, iodata v1.0.0a8, phonopy v2.43.2, Pint v0.25 #24572

Merged

github-actions bot added the change label Nov 14, 2025

This was referenced Nov 14, 2025

{tools}[GCCcore/14.3.0] ruff v0.14.3 #24540

Merged

pyiron + nglview vscentrum/vsc-software-stack#573

Closed

Thyre added the ready-to-review label Nov 15, 2025

Micket added this to the next release (5.2.0?) milestone Nov 18, 2025

Micket approved these changes Nov 18, 2025

View reviewed changes

Thyre removed the ready-to-review label Nov 18, 2025

Thyre added the ready-to-merge label Nov 18, 2025

Micket merged commit 85ada9f into easybuilders:develop Nov 18, 2025
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boegel changed the title ~~{vis}[GCCcore/14.3.0] graphviz-python v0.21, Graphviz v13.1.2~~ {vis}[GCCcore/14.3.0] graphviz-python v0.21, Graphviz v13.1.2 + use non-minimal Graphviz as dependency for MUST Dec 19, 2025

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Updated software Graphviz-13.1.2-GCCcore-14.3.0.eb

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Updated software `Graphviz-13.1.2-GCCcore-14.3.0.eb`

Updated software `graphviz-python-0.21-GCCcore-14.3.0.eb`

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